Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Vibrionales
Family
Vibrionaceae
Genus
Photobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Vibrionales |
| Family | Vibrionaceae |
| Genus | Photobacterium |
| Species | Photobacterium damselae |
| Strain | subsp. damselae strain KC-Na-1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | mesophilic |
| Habitat | coastal waters; estuaries; Marine; oceans; seaweeds; sediments |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Pancrustacea, Aves |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Photobacterium damselae subsp. damselae strain KC-Na-1 plasmid
Gene Summary
Adenine Count
24830 bp
Thymine Count
23536 bp
Guanine Count
16496 bp
Cytosine Count
16140 bp
Genome Length
81002 bp
Protein-coding Genes
81 genes
Non-Coding Genes
0 genes
# of Chromosomes/Plasmids
5
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| marr family winged helix-turn-helix transcriptional regulator | CAY62_RS05220 | Not Available | Negative | 1128277 - 1128768 | 18460.3 |
| murein l,d-transpeptidase | CAY62_RS05225 | Not Available | Positive | 1129177 - 1130928 | 67033.5 |
| ycbk family protein | CAY62_RS05230 | Not Available | Positive | 1131088 - 1131645 | 20547.9 |
| mbl fold metallo-hydrolase | CAY62_RS05235 | Not Available | Positive | 1132020 - 1132673 | 23786.3 |
| transcriptional regulator uhpa | CAY62_RS05240 | Not Available | Positive | 1132814 - 1133422 | 21777.2 |
| signal transduction histidine-protein kinase/phosphatase uhpb | CAY62_RS05245 | Not Available | Positive | 1133422 - 1134954 | 57449.7 |
| mfs transporter | CAY62_RS05250 | Not Available | Positive | 1134970 - 1136301 | 49610.1 |
| rna polymerase sigma factor rpod/siga | CAY62_RS05255 | Not Available | Positive | 1136554 - 1137402 | 32423.9 |
| duf2982 domain-containing protein | CAY62_RS05260 | Not Available | Negative | 1137399 - 1138058 | 25205.0 |
| hypothetical protein | CAY62_RS05265 | Not Available | Positive | 1138360 - 1138764 | 14410.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Haemorrhagic septicemia | Causes | PMC12895208 |
| Skin lesions | Causes | PMC12895208 |
| Necrotizing fasciitis | Causes | PMC12895208 |
| Soft-tissue infection | Causes | PMC8231020 |
| Chronic suppurative pneumonia | Causes | PMC9796189 |
| Splenic lymphoid depletion | Causes | PMC9796189 |
| Wound infections | Causes | PMC9796189 |
| Hemorrhagic septicemia | Causes | PMC9796189 |
| Pneumonia | Causes | PMC9796189 |


