Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Vibrionales
Family
Vibrionaceae
Genus
Photobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Vibrionales |
| Family | Vibrionaceae |
| Genus | Photobacterium |
| Species | Photobacterium damselae |
| Strain | subsp. damselae strain KC-Na-1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | mesophilic |
| Habitat | coastal waters; estuaries; Marine; oceans; seaweeds; sediments |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Pancrustacea, Aves |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Photobacterium damselae subsp. damselae strain KC-Na-1 plasmid
Gene Summary
Adenine Count
24830 bp
Thymine Count
23536 bp
Guanine Count
16496 bp
Cytosine Count
16140 bp
Genome Length
81002 bp
Protein-coding Genes
81 genes
Non-Coding Genes
0 genes
# of Chromosomes/Plasmids
5
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| s-(hydroxymethyl)glutathione synthase | CAY62_RS04970 | Not Available | Negative | 1080548 - 1081120 | 20566.4 |
| nad(p)/fad-dependent oxidoreductase | CAY62_RS04975 | Not Available | Negative | 1081263 - 1082486 | 44750.8 |
| nad(p)/fad-dependent oxidoreductase | CAY62_RS04980 | Not Available | Negative | 1082754 - 1083965 | 44298.3 |
| sulp family inorganic anion transporter | CAY62_RS04985 | Not Available | Positive | 1084821 - 1086542 | 61872.1 |
| nramp family divalent metal transporter | CAY62_RS04990 | Not Available | Negative | 1086663 - 1087895 | 43206.3 |
| rida family protein | CAY62_RS04995 | Not Available | Positive | 1088194 - 1088667 | 17182.7 |
| permease | CAY62_RS05000 | Not Available | Negative | 1088726 - 1089805 | 38773.1 |
| arsr/smtb family transcription factor | CAY62_RS05005 | Not Available | Positive | 1089992 - 1090285 | 10507.7 |
| duf2256 domain-containing protein | CAY62_RS05010 | Not Available | Negative | 1090242 - 1090421 | 7294.91 |
| ggdef domain-containing protein | CAY62_RS05015 | Not Available | Negative | 1090455 - 1091417 | 36898.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Haemorrhagic septicemia | Causes | PMC12895208 |
| Skin lesions | Causes | PMC12895208 |
| Necrotizing fasciitis | Causes | PMC12895208 |
| Soft-tissue infection | Causes | PMC8231020 |
| Chronic suppurative pneumonia | Causes | PMC9796189 |
| Splenic lymphoid depletion | Causes | PMC9796189 |
| Wound infections | Causes | PMC9796189 |
| Hemorrhagic septicemia | Causes | PMC9796189 |
| Pneumonia | Causes | PMC9796189 |


