Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Vibrionales
Family
Vibrionaceae
Genus
Photobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Vibrionales |
| Family | Vibrionaceae |
| Genus | Photobacterium |
| Species | Photobacterium damselae |
| Strain | subsp. damselae strain KC-Na-1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | mesophilic |
| Habitat | coastal waters; estuaries; Marine; oceans; seaweeds; sediments |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Pancrustacea, Aves |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Photobacterium damselae subsp. damselae strain KC-Na-1 plasmid
Gene Summary
Adenine Count
24830 bp
Thymine Count
23536 bp
Guanine Count
16496 bp
Cytosine Count
16140 bp
Genome Length
81002 bp
Protein-coding Genes
81 genes
Non-Coding Genes
0 genes
# of Chromosomes/Plasmids
5
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| sensor histidine kinase | CAY62_RS04920 | Not Available | Negative | 1066262 - 1067509 | 48068.1 |
| response regulator transcription factor | CAY62_RS04925 | Not Available | Negative | 1067481 - 1068149 | 25227.6 |
| duf5666 domain-containing protein | CAY62_RS04930 | Not Available | Positive | 1068243 - 1069400 | 41722.3 |
| trimethylamine-n-oxide reductase tora | CAY62_RS04935 | Not Available | Negative | 1069603 - 1072065 | 92815.0 |
| pentaheme c-type cytochrome torc | CAY62_RS04940 | Not Available | Negative | 1072086 - 1073264 | 44111.9 |
| trimethylamine n-oxide reductase system protein tore | CAY62_RS04945 | Not Available | Negative | 1073302 - 1073478 | 6571.19 |
| phosphoribosylaminoimidazolesuccinocarboxamide synthase | CAY62_RS04950 | Not Available | Negative | 1073976 - 1075079 | 41688.7 |
| metal-dependent hydrolase | CAY62_RS04955 | Not Available | Negative | 1075288 - 1076055 | 28135.8 |
| atp-dependent helicase | CAY62_RS04960 | Not Available | Positive | 1076348 - 1078672 | 89788.3 |
| dicarboxylate/amino acid:cation symporter | CAY62_RS04965 | Not Available | Negative | 1078773 - 1080026 | 44081.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Haemorrhagic septicemia | Causes | PMC12895208 |
| Skin lesions | Causes | PMC12895208 |
| Necrotizing fasciitis | Causes | PMC12895208 |
| Soft-tissue infection | Causes | PMC8231020 |
| Chronic suppurative pneumonia | Causes | PMC9796189 |
| Splenic lymphoid depletion | Causes | PMC9796189 |
| Wound infections | Causes | PMC9796189 |
| Hemorrhagic septicemia | Causes | PMC9796189 |
| Pneumonia | Causes | PMC9796189 |


