Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Vibrionales
Family
Vibrionaceae
Genus
Photobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Vibrionales |
| Family | Vibrionaceae |
| Genus | Photobacterium |
| Species | Photobacterium damselae |
| Strain | subsp. damselae strain KC-Na-1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | mesophilic |
| Habitat | coastal waters; estuaries; Marine; oceans; seaweeds; sediments |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Pancrustacea, Aves |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Photobacterium damselae subsp. damselae strain KC-Na-1 plasmid
Gene Summary
Adenine Count
24830 bp
Thymine Count
23536 bp
Guanine Count
16496 bp
Cytosine Count
16140 bp
Genome Length
81002 bp
Protein-coding Genes
81 genes
Non-Coding Genes
0 genes
# of Chromosomes/Plasmids
5
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| arginine decarboxylase | CAY62_RS04875 | Not Available | Positive | 1051916 - 1054207 | 85410.4 |
| class i ribonucleotide reductase maintenance protein yfae | CAY62_RS04880 | Not Available | Negative | 1054255 - 1054545 | 10610.7 |
| class ia ribonucleoside-diphosphate reductase subunit beta | CAY62_RS04885 | Not Available | Negative | 1054542 - 1055675 | 43479.3 |
| class 1a ribonucleoside-diphosphate reductase subunit alpha | CAY62_RS04890 | Not Available | Negative | 1055722 - 1057989 | 85039.0 |
| bifunctional 2-polyprenyl-6-hydroxyphenol methylase/3-demethylubiquinol 3-o-methyltransferase ubig | CAY62_RS04895 | Not Available | Negative | 1058475 - 1059185 | 26258.7 |
| hypothetical protein | CAY62_RS21750 | Not Available | Negative | 1059253 - 1059402 | 5200.55 |
| dna topoisomerase (atp-hydrolyzing) subunit a | CAY62_RS04900 | Not Available | Positive | 1059846 - 1062467 | 97141.2 |
| 3-phosphoserine/phosphohydroxythreonine transaminase | CAY62_RS04905 | Not Available | Positive | 1062682 - 1063764 | 39734.6 |
| abc transporter atp-binding protein/permease | CAY62_RS04910 | Not Available | Positive | 1063908 - 1065656 | 66531.9 |
| lipocalin family protein | CAY62_RS04915 | Not Available | Negative | 1065653 - 1066243 | 22609.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Haemorrhagic septicemia | Causes | PMC12895208 |
| Skin lesions | Causes | PMC12895208 |
| Necrotizing fasciitis | Causes | PMC12895208 |
| Soft-tissue infection | Causes | PMC8231020 |
| Chronic suppurative pneumonia | Causes | PMC9796189 |
| Splenic lymphoid depletion | Causes | PMC9796189 |
| Wound infections | Causes | PMC9796189 |
| Hemorrhagic septicemia | Causes | PMC9796189 |
| Pneumonia | Causes | PMC9796189 |


