Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Vibrionales
Family
Vibrionaceae
Genus
Photobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Vibrionales |
| Family | Vibrionaceae |
| Genus | Photobacterium |
| Species | Photobacterium damselae |
| Strain | subsp. damselae strain KC-Na-1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | mesophilic |
| Habitat | coastal waters; estuaries; Marine; oceans; seaweeds; sediments |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Pancrustacea, Aves |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Photobacterium damselae subsp. damselae strain KC-Na-1 plasmid
Gene Summary
Adenine Count
24830 bp
Thymine Count
23536 bp
Guanine Count
16496 bp
Cytosine Count
16140 bp
Genome Length
81002 bp
Protein-coding Genes
81 genes
Non-Coding Genes
0 genes
# of Chromosomes/Plasmids
5
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| anthranilate phosphoribosyltransferase | CAY62_RS04770 | Not Available | Negative | 1026157 - 1027164 | 35594.8 |
| aminodeoxychorismate/anthranilate synthase component ii | CAY62_RS04775 | Not Available | Negative | 1027169 - 1027798 | 22631.3 |
| anthranilate synthase component 1 | CAY62_RS04780 | Not Available | Negative | 1027791 - 1029449 | 61276.5 |
| 3-deoxy-7-phosphoheptulonate synthase | CAY62_RS04785 | Not Available | Negative | 1029449 - 1030462 | 36577.6 |
| rnase rnm | CAY62_RS04790 | Not Available | Positive | 1030759 - 1031628 | 32546.9 |
| l-threonylcarbamoyladenylate synthase | CAY62_RS04795 | Not Available | Positive | 1031648 - 1032271 | 23236.9 |
| 23s rrna pseudouridine(2605) synthase rlub | CAY62_RS04800 | Not Available | Positive | 1032630 - 1033787 | 43915.9 |
| ycik family oxidoreductase | CAY62_RS04805 | Not Available | Negative | 1033871 - 1034632 | 27219.8 |
| protease sohb | CAY62_RS04810 | Not Available | Positive | 1034909 - 1035970 | 38810.0 |
| ycin family protein | CAY62_RS04815 | Not Available | Negative | 1036053 - 1036301 | 9315.07 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Haemorrhagic septicemia | Causes | PMC12895208 |
| Skin lesions | Causes | PMC12895208 |
| Necrotizing fasciitis | Causes | PMC12895208 |
| Soft-tissue infection | Causes | PMC8231020 |
| Chronic suppurative pneumonia | Causes | PMC9796189 |
| Splenic lymphoid depletion | Causes | PMC9796189 |
| Wound infections | Causes | PMC9796189 |
| Hemorrhagic septicemia | Causes | PMC9796189 |
| Pneumonia | Causes | PMC9796189 |


