Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Vibrionales
Family
Vibrionaceae
Genus
Photobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Vibrionales |
| Family | Vibrionaceae |
| Genus | Photobacterium |
| Species | Photobacterium damselae |
| Strain | subsp. damselae strain KC-Na-1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | mesophilic |
| Habitat | coastal waters; estuaries; Marine; oceans; seaweeds; sediments |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Pancrustacea, Aves |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Photobacterium damselae subsp. damselae strain KC-Na-1 plasmid
Gene Summary
Adenine Count
24830 bp
Thymine Count
23536 bp
Guanine Count
16496 bp
Cytosine Count
16140 bp
Genome Length
81002 bp
Protein-coding Genes
81 genes
Non-Coding Genes
0 genes
# of Chromosomes/Plasmids
5
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| amino acid abc transporter atp-binding protein | CAY62_RS04715 | Not Available | Positive | 1017985 - 1018374 | 14853.6 |
| tigr01621 family pseudouridine synthase | CAY62_RS04720 | Not Available | Positive | 1018525 - 1019208 | 25372.3 |
| class i sam-dependent methyltransferase | CAY62_RS04730 | Not Available | Positive | 1019749 - 1020687 | 35160.2 |
| type ii secretion system pilot lipoprotein gsps-beta | CAY62_RS04735 | Not Available | Negative | 1020835 - 1021227 | 13919.9 |
| ycii family protein | CAY62_RS04740 | Not Available | Negative | 1021245 - 1021544 | 11083.2 |
| acyl-coa thioester hydrolase ycia | CAY62_RS04745 | Not Available | Negative | 1021678 - 1022076 | 14200.2 |
| septation protein a | CAY62_RS04750 | Not Available | Negative | 1022089 - 1022628 | 20608.3 |
| tryptophan synthase subunit alpha | CAY62_RS04755 | Not Available | Negative | 1022743 - 1023555 | 28661.6 |
| tryptophan synthase subunit beta | CAY62_RS04760 | Not Available | Negative | 1023555 - 1024745 | 42571.2 |
| bifunctional indole-3-glycerol-phosphate synthase trpc/phosphoribosylanthranilate isomerase trpf | CAY62_RS04765 | Not Available | Negative | 1024738 - 1026147 | 52378.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Haemorrhagic septicemia | Causes | PMC12895208 |
| Skin lesions | Causes | PMC12895208 |
| Necrotizing fasciitis | Causes | PMC12895208 |
| Soft-tissue infection | Causes | PMC8231020 |
| Chronic suppurative pneumonia | Causes | PMC9796189 |
| Splenic lymphoid depletion | Causes | PMC9796189 |
| Wound infections | Causes | PMC9796189 |
| Hemorrhagic septicemia | Causes | PMC9796189 |
| Pneumonia | Causes | PMC9796189 |


