Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Vibrionales
Family
Vibrionaceae
Genus
Photobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Vibrionales |
| Family | Vibrionaceae |
| Genus | Photobacterium |
| Species | Photobacterium damselae |
| Strain | subsp. damselae strain KC-Na-1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | mesophilic |
| Habitat | coastal waters; estuaries; Marine; oceans; seaweeds; sediments |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Pancrustacea, Aves |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Photobacterium damselae subsp. damselae strain KC-Na-1 plasmid
Gene Summary
Adenine Count
24830 bp
Thymine Count
23536 bp
Guanine Count
16496 bp
Cytosine Count
16140 bp
Genome Length
81002 bp
Protein-coding Genes
81 genes
Non-Coding Genes
0 genes
# of Chromosomes/Plasmids
5
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| tol-pal system-associated acyl-coa thioesterase | CAY62_RS04515 | Not Available | Positive | 976889 - 977296 | 15536.0 |
| protein tolq | CAY62_RS04520 | Not Available | Positive | 977293 - 977979 | 25244.9 |
| protein tolr | CAY62_RS04525 | Not Available | Positive | 977982 - 978425 | 15862.2 |
| cell envelope integrity protein tola | CAY62_RS04530 | Not Available | Positive | 978436 - 979524 | 40323.1 |
| tol-pal system beta propeller repeat protein tolb | CAY62_RS04535 | Not Available | Positive | 979536 - 980885 | 49757.3 |
| peptidoglycan-associated lipoprotein pal | CAY62_RS04540 | Not Available | Positive | 980933 - 981478 | 19558.2 |
| tol-pal system protein ybgf | CAY62_RS04545 | Not Available | Positive | 981495 - 982229 | 27407.2 |
| quinolinate synthase nada | CAY62_RS04550 | Not Available | Positive | 982396 - 983439 | 37883.5 |
| response regulator | CAY62_RS04555 | Not Available | Positive | 983575 - 985425 | 69577.1 |
| upf0149 family protein | CAY62_RS04560 | Not Available | Negative | 985469 - 986044 | 20856.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Haemorrhagic septicemia | Causes | PMC12895208 |
| Skin lesions | Causes | PMC12895208 |
| Necrotizing fasciitis | Causes | PMC12895208 |
| Soft-tissue infection | Causes | PMC8231020 |
| Chronic suppurative pneumonia | Causes | PMC9796189 |
| Splenic lymphoid depletion | Causes | PMC9796189 |
| Wound infections | Causes | PMC9796189 |
| Hemorrhagic septicemia | Causes | PMC9796189 |
| Pneumonia | Causes | PMC9796189 |


