Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Vibrionales
Family
Vibrionaceae
Genus
Photobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Vibrionales |
| Family | Vibrionaceae |
| Genus | Photobacterium |
| Species | Photobacterium damselae |
| Strain | subsp. damselae strain KC-Na-1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | mesophilic |
| Habitat | coastal waters; estuaries; Marine; oceans; seaweeds; sediments |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Pancrustacea, Aves |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Photobacterium damselae subsp. damselae strain KC-Na-1 plasmid
Gene Summary
Adenine Count
24830 bp
Thymine Count
23536 bp
Guanine Count
16496 bp
Cytosine Count
16140 bp
Genome Length
81002 bp
Protein-coding Genes
81 genes
Non-Coding Genes
0 genes
# of Chromosomes/Plasmids
5
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| holliday junction branch migration dna helicase ruvb | CAY62_RS04465 | Not Available | Positive | 966718 - 967728 | 37532.3 |
| dihydrodipicolinate synthase family protein | CAY62_RS04470 | Not Available | Negative | 967903 - 968805 | 31955.3 |
| murr/rpir family transcriptional regulator | CAY62_RS04475 | Not Available | Positive | 969129 - 970004 | 31280.4 |
| n-acetylmannosamine-6-phosphate 2-epimerase | CAY62_RS04480 | Not Available | Positive | 970264 - 970971 | 24734.8 |
| n-acetylmannosamine kinase | CAY62_RS04485 | Not Available | Positive | 970968 - 971846 | 30299.3 |
| n-acetylneuraminate anomerase | CAY62_RS04490 | Not Available | Positive | 971909 - 972376 | 17546.1 |
| cytochrome ubiquinol oxidase subunit i | CAY62_RS04495 | Not Available | Positive | 973405 - 974991 | 58917.3 |
| cytochrome d ubiquinol oxidase subunit ii | CAY62_RS04500 | Not Available | Positive | 975010 - 976146 | 41649.6 |
| cytochrome bd-i oxidase subunit cydx | CAY62_RS04505 | Not Available | Positive | 976158 - 976262 | 3995.82 |
| cyd operon protein ybge | CAY62_RS04510 | Not Available | Positive | 976259 - 976570 | 11328.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Haemorrhagic septicemia | Causes | PMC12895208 |
| Skin lesions | Causes | PMC12895208 |
| Necrotizing fasciitis | Causes | PMC12895208 |
| Soft-tissue infection | Causes | PMC8231020 |
| Chronic suppurative pneumonia | Causes | PMC9796189 |
| Splenic lymphoid depletion | Causes | PMC9796189 |
| Wound infections | Causes | PMC9796189 |
| Hemorrhagic septicemia | Causes | PMC9796189 |
| Pneumonia | Causes | PMC9796189 |


