Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Vibrionales
Family
Vibrionaceae
Genus
Photobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Vibrionales |
| Family | Vibrionaceae |
| Genus | Photobacterium |
| Species | Photobacterium damselae |
| Strain | subsp. damselae strain KC-Na-1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | mesophilic |
| Habitat | coastal waters; estuaries; Marine; oceans; seaweeds; sediments |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Pancrustacea, Aves |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Photobacterium damselae subsp. damselae strain KC-Na-1 plasmid
Gene Summary
Adenine Count
24830 bp
Thymine Count
23536 bp
Guanine Count
16496 bp
Cytosine Count
16140 bp
Genome Length
81002 bp
Protein-coding Genes
81 genes
Non-Coding Genes
0 genes
# of Chromosomes/Plasmids
5
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| alpha-l-glutamate ligase-like protein | CAY62_RS04415 | Not Available | Negative | 956198 - 957172 | 35640.4 |
| inactive transglutaminase family protein | CAY62_RS04420 | Not Available | Negative | 957176 - 958687 | 55915.5 |
| atp-dependent zinc protease | CAY62_RS04425 | Not Available | Negative | 958706 - 959503 | 29968.0 |
| trna 5-methoxyuridine(34)/uridine 5-oxyacetic acid(34) synthase cmob | CAY62_RS04430 | Not Available | Negative | 959592 - 960566 | 37791.4 |
| carboxy-s-adenosyl-l-methionine synthase cmoa | CAY62_RS04435 | Not Available | Negative | 960585 - 961313 | 27174.5 |
| duf72 domain-containing protein | CAY62_RS04440 | Not Available | Negative | 961485 - 962381 | 34025.7 |
| aspartate--trna ligase | CAY62_RS04445 | Not Available | Positive | 962624 - 964402 | 66171.4 |
| yebc/pmpr family dna-binding transcriptional regulator | CAY62_RS04450 | Not Available | Positive | 964622 - 965368 | 26410.8 |
| crossover junction endodeoxyribonuclease ruvc | CAY62_RS04455 | Not Available | Positive | 965385 - 965906 | 18297.3 |
| holliday junction branch migration protein ruva | CAY62_RS04460 | Not Available | Positive | 966076 - 966699 | 22635.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Haemorrhagic septicemia | Causes | PMC12895208 |
| Skin lesions | Causes | PMC12895208 |
| Necrotizing fasciitis | Causes | PMC12895208 |
| Soft-tissue infection | Causes | PMC8231020 |
| Chronic suppurative pneumonia | Causes | PMC9796189 |
| Splenic lymphoid depletion | Causes | PMC9796189 |
| Wound infections | Causes | PMC9796189 |
| Hemorrhagic septicemia | Causes | PMC9796189 |
| Pneumonia | Causes | PMC9796189 |


