Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Vibrionales
Family
Vibrionaceae
Genus
Photobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Vibrionales |
| Family | Vibrionaceae |
| Genus | Photobacterium |
| Species | Photobacterium damselae |
| Strain | subsp. damselae strain KC-Na-1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | mesophilic |
| Habitat | coastal waters; estuaries; Marine; oceans; seaweeds; sediments |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Pancrustacea, Aves |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Photobacterium damselae subsp. damselae strain KC-Na-1 plasmid
Gene Summary
Adenine Count
24830 bp
Thymine Count
23536 bp
Guanine Count
16496 bp
Cytosine Count
16140 bp
Genome Length
81002 bp
Protein-coding Genes
81 genes
Non-Coding Genes
0 genes
# of Chromosomes/Plasmids
5
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| sulfite exporter taue/safe family protein | CAY62_RS04365 | Not Available | Positive | 944033 - 944926 | 31525.9 |
| udp-2,3-diacylglucosamine diphosphatase | CAY62_RS04370 | Not Available | Negative | 944992 - 945735 | 28463.8 |
| peptidylprolyl isomerase | CAY62_RS04375 | Not Available | Negative | 945785 - 946279 | 18053.3 |
| cysteine--trna ligase | CAY62_RS04380 | Not Available | Positive | 946476 - 947855 | 51915.4 |
| glycerophosphodiester phosphodiesterase | CAY62_RS04385 | Not Available | Positive | 948189 - 949235 | 40031.7 |
| ion transporter | CAY62_RS04390 | Not Available | Negative | 949447 - 950265 | 30734.4 |
| yche family naat transporter | CAY62_RS04395 | Not Available | Negative | 950393 - 951031 | 22510.4 |
| bifunctional acetaldehyde-coa/alcohol dehydrogenase | CAY62_RS04400 | Not Available | Positive | 951832 - 954525 | 97123.8 |
| sdr family oxidoreductase | CAY62_RS04405 | Not Available | Negative | 954608 - 955288 | 25028.1 |
| vc2046/so_2500 family protein | CAY62_RS04410 | Not Available | Negative | 955520 - 956053 | 19745.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Haemorrhagic septicemia | Causes | PMC12895208 |
| Skin lesions | Causes | PMC12895208 |
| Necrotizing fasciitis | Causes | PMC12895208 |
| Soft-tissue infection | Causes | PMC8231020 |
| Chronic suppurative pneumonia | Causes | PMC9796189 |
| Splenic lymphoid depletion | Causes | PMC9796189 |
| Wound infections | Causes | PMC9796189 |
| Hemorrhagic septicemia | Causes | PMC9796189 |
| Pneumonia | Causes | PMC9796189 |


