Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Vibrionales
Family
Vibrionaceae
Genus
Photobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Vibrionales |
| Family | Vibrionaceae |
| Genus | Photobacterium |
| Species | Photobacterium damselae |
| Strain | subsp. damselae strain KC-Na-1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | mesophilic |
| Habitat | coastal waters; estuaries; Marine; oceans; seaweeds; sediments |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Pancrustacea, Aves |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Photobacterium damselae subsp. damselae strain KC-Na-1 plasmid
Gene Summary
Adenine Count
24830 bp
Thymine Count
23536 bp
Guanine Count
16496 bp
Cytosine Count
16140 bp
Genome Length
81002 bp
Protein-coding Genes
81 genes
Non-Coding Genes
0 genes
# of Chromosomes/Plasmids
5
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| bifunctional phosphoribosyl-amp cyclohydrolase/phosphoribosyl-atp diphosphatase hisie | CAY62_RS04315 | Not Available | Negative | 934475 - 935095 | 22984.6 |
| imidazole glycerol phosphate synthase subunit hisf | CAY62_RS04320 | Not Available | Negative | 935092 - 935865 | 28475.1 |
| 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino]imidazole-4- carboxamide isomerase | CAY62_RS04325 | Not Available | Negative | 935875 - 936612 | 26492.6 |
| imidazole glycerol phosphate synthase subunit hish | CAY62_RS04330 | Not Available | Negative | 936627 - 937253 | 22961.0 |
| bifunctional histidinol-phosphatase/imidazoleglycerol-phosphate dehydratase hisb | CAY62_RS04335 | Not Available | Negative | 937253 - 938326 | 39883.6 |
| histidinol-phosphate transaminase | CAY62_RS04340 | Not Available | Negative | 938339 - 939385 | 38644.5 |
| histidinol dehydrogenase | CAY62_RS04345 | Not Available | Negative | 939407 - 940702 | 46487.5 |
| atp phosphoribosyltransferase | CAY62_RS04350 | Not Available | Negative | 940707 - 941603 | 33149.8 |
| ychj family metal-binding protein | CAY62_RS04355 | Not Available | Negative | 942015 - 942527 | 19014.2 |
| eal and hdod domain-containing protein | CAY62_RS04360 | Not Available | Negative | 942520 - 943755 | 47405.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Haemorrhagic septicemia | Causes | PMC12895208 |
| Skin lesions | Causes | PMC12895208 |
| Necrotizing fasciitis | Causes | PMC12895208 |
| Soft-tissue infection | Causes | PMC8231020 |
| Chronic suppurative pneumonia | Causes | PMC9796189 |
| Splenic lymphoid depletion | Causes | PMC9796189 |
| Wound infections | Causes | PMC9796189 |
| Hemorrhagic septicemia | Causes | PMC9796189 |
| Pneumonia | Causes | PMC9796189 |


