Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Vibrionales
Family
Vibrionaceae
Genus
Photobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Vibrionales |
| Family | Vibrionaceae |
| Genus | Photobacterium |
| Species | Photobacterium damselae |
| Strain | subsp. damselae strain KC-Na-1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | mesophilic |
| Habitat | coastal waters; estuaries; Marine; oceans; seaweeds; sediments |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Pancrustacea, Aves |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Photobacterium damselae subsp. damselae strain KC-Na-1 plasmid
Gene Summary
Adenine Count
24830 bp
Thymine Count
23536 bp
Guanine Count
16496 bp
Cytosine Count
16140 bp
Genome Length
81002 bp
Protein-coding Genes
81 genes
Non-Coding Genes
0 genes
# of Chromosomes/Plasmids
5
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| ribonuclease d | CAY62_RS04265 | Not Available | Positive | 926000 - 927148 | 43659.4 |
| cell division topological specificity factor mine | CAY62_RS04270 | Not Available | Negative | 927235 - 927498 | 9835.93 |
| septum site-determining protein mind | CAY62_RS04275 | Not Available | Negative | 927504 - 928316 | 29484.5 |
| septum site-determining protein minc | CAY62_RS04280 | Not Available | Negative | 928339 - 929001 | 23625.5 |
| ycgl domain-containing protein | CAY62_RS04285 | Not Available | Positive | 929208 - 929486 | 10233.7 |
| lytic transglycosylase domain-containing protein | CAY62_RS04290 | Not Available | Positive | 929497 - 930468 | 36451.2 |
| h-ns family nucleoid-associated regulatory protein | CAY62_RS04295 | Not Available | Negative | 930764 - 931159 | 14883.6 |
| na+/h+ antiporter nhac family protein | CAY62_RS04300 | Not Available | Positive | 931821 - 933416 | 56629.9 |
| thymidine kinase | CAY62_RS04305 | Not Available | Positive | 933570 - 934148 | 21935.1 |
| vf530 family dna-binding protein | CAY62_RS04310 | Not Available | Positive | 934158 - 934370 | 8418.24 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Haemorrhagic septicemia | Causes | PMC12895208 |
| Skin lesions | Causes | PMC12895208 |
| Necrotizing fasciitis | Causes | PMC12895208 |
| Soft-tissue infection | Causes | PMC8231020 |
| Chronic suppurative pneumonia | Causes | PMC9796189 |
| Splenic lymphoid depletion | Causes | PMC9796189 |
| Wound infections | Causes | PMC9796189 |
| Hemorrhagic septicemia | Causes | PMC9796189 |
| Pneumonia | Causes | PMC9796189 |


