Photobacterium damselae subsp. damselae strain KC-Na-1

Motile

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Vibrionales

Family

Vibrionaceae

Genus

Photobacterium

Description

Photobacterium damselae subsp. damselae strain KC-Na-1 is a Gram-negative bacterium predominantly found in coastal waters, estuaries, oceans, and associated environments such as seaweeds and sediments. This mesophilic organism exhibits mobility, facilitated by the presence of flagella. Notably, it contains five replicons within its genetic structure, which may contribute to its adaptability and survivability in various marine ecosystems. This strain has a broad range of hosts, including Homo sapiens (humans), Pancrustacea (crustaceans), Aves (birds), Mollusca (mollusks), and Cetacea (whales and dolphins), as well as specific species such as Alca torda (razorbill) and Tursiops truncatus (bottlenose dolphin). The diverse host range underscores its ecological versatility and potential impact on marine biodiversity. In terms of health implications, Photobacterium damselae subsp. damselae strain KC-Na-1 has been associated with various infections in humans, including pneumonia, wound infections, necrotizing fasciitis, soft-tissue infections, and chronic suppurative pneumonia. The bacterium can also cause hemorrhagic septicemia and skin lesions, illustrating its pathogenic potential. The presence of this organism in marine environments and its ability to infect various hosts highlight the interconnectedness of marine ecosystems and human health. Understanding Photobacterium damselae subsp. damselae strain KC-Na-1's ecology and pathogenicity is essential for managing health risks associated with marine activities and for preserving marine biodiversity.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderVibrionales
FamilyVibrionaceae
GenusPhotobacterium
SpeciesPhotobacterium damselae
Strainsubsp. damselae strain KC-Na-1

Profile

Physiology
Gram staining propertiesNegative
ShapeNot Available
MobilityYes
Flagellar presenceYes
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangemesophilic
Habitatcoastal waters; estuaries; Marine; oceans; seaweeds; sediments
Biotic relationshipNot Available
Host(s)Homo sapiens, Pancrustacea, Aves
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Photobacterium damselae subsp. damselae strain KC-Na-1


Gene Summary

Adenine Count

24830 bp

Thymine Count

23536 bp

Guanine Count

16496 bp

Cytosine Count

16140 bp

Genome Length

81002 bp

Protein-coding Genes

81 genes

Non-Coding Genes

0 genes

# of Chromosomes/Plasmids

5

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
trbc/virb2 family proteinCAY62_RS20435Not AvailablePositive11355 - 1165410587.2
virb4 family type iv secretion/conjugal transfer atpaseCAY62_RS20445Not AvailablePositive12006 - 1443891626.2
virb8 family proteinCAY62_RS20450Not AvailablePositive14431 - 1514126949.1
p-type conjugative transfer protein virb9CAY62_RS20455Not AvailablePositive15141 - 1602832449.4
type iv secretion system protein virb10CAY62_RS20460Not AvailablePositive16028 - 1720042544.9
p-type dna transfer atpase virb11CAY62_RS20465Not AvailablePositive17160 - 1819138583.6
hypothetical proteinCAY62_RS20470Not AvailablePositive18201 - 184318405.09
type iv secretory system conjugative dna transfer family proteinCAY62_RS20475Not AvailablePositive18428 - 2028469876.7
hypothetical proteinCAY62_RS20480Not AvailablePositive20296 - 2114731887.9
type ii secretion system protein gspdCAY62_RS20485Not AvailablePositive21147 - 2260752885.8

Displaying genes 11 – 20 of 4224 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

Health ConditionRelationReference
Haemorrhagic septicemiaCausesPMC12895208
Skin lesionsCausesPMC12895208
Necrotizing fasciitisCausesPMC12895208
Soft-tissue infectionCausesPMC8231020
Chronic suppurative pneumoniaCausesPMC9796189
Splenic lymphoid depletionCausesPMC9796189
Wound infectionsCausesPMC9796189
Hemorrhagic septicemiaCausesPMC9796189
PneumoniaCausesPMC9796189

Displaying health effects 1 – 9 of 9 in total