Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Vibrionales
Family
Vibrionaceae
Genus
Photobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Vibrionales |
| Family | Vibrionaceae |
| Genus | Photobacterium |
| Species | Photobacterium damselae |
| Strain | subsp. damselae strain KC-Na-1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | mesophilic |
| Habitat | coastal waters; estuaries; Marine; oceans; seaweeds; sediments |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Pancrustacea, Aves |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Photobacterium damselae subsp. damselae strain KC-Na-1 plasmid
Gene Summary
Adenine Count
24830 bp
Thymine Count
23536 bp
Guanine Count
16496 bp
Cytosine Count
16140 bp
Genome Length
81002 bp
Protein-coding Genes
81 genes
Non-Coding Genes
0 genes
# of Chromosomes/Plasmids
5
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| adp-forming succinate--coa ligase subunit beta | CAY62_RS04165 | Not Available | Positive | 905062 - 906228 | 41374.6 |
| succinate--coa ligase subunit alpha | CAY62_RS04170 | Not Available | Positive | 906228 - 907100 | 29842.2 |
| zinc abc transporter permease subunit znub | CAY62_RS04175 | Not Available | Negative | 907189 - 907974 | 27850.6 |
| zinc abc transporter atp-binding protein znuc | CAY62_RS04180 | Not Available | Negative | 907986 - 908735 | 27546.7 |
| zinc abc transporter substrate-binding protein znua | CAY62_RS04185 | Not Available | Positive | 908832 - 909767 | 34668.9 |
| murein dd-endopeptidase mepm | CAY62_RS04190 | Not Available | Positive | 909770 - 911119 | 50139.1 |
| ferrous iron transport protein a | CAY62_RS04195 | Not Available | Positive | 911335 - 911562 | 8086.25 |
| fe(2+) transporter permease subunit feob | CAY62_RS04200 | Not Available | Positive | 911562 - 913838 | 83027.1 |
| feoc-like transcriptional regulator | CAY62_RS04205 | Not Available | Positive | 913835 - 914077 | 9186.29 |
| hit domain-containing protein | CAY62_RS04210 | Not Available | Negative | 914152 - 914586 | 16175.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Haemorrhagic septicemia | Causes | PMC12895208 |
| Skin lesions | Causes | PMC12895208 |
| Necrotizing fasciitis | Causes | PMC12895208 |
| Soft-tissue infection | Causes | PMC8231020 |
| Chronic suppurative pneumonia | Causes | PMC9796189 |
| Splenic lymphoid depletion | Causes | PMC9796189 |
| Wound infections | Causes | PMC9796189 |
| Hemorrhagic septicemia | Causes | PMC9796189 |
| Pneumonia | Causes | PMC9796189 |


