Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Vibrionales
Family
Vibrionaceae
Genus
Photobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Vibrionales |
| Family | Vibrionaceae |
| Genus | Photobacterium |
| Species | Photobacterium damselae |
| Strain | subsp. damselae strain KC-Na-1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | mesophilic |
| Habitat | coastal waters; estuaries; Marine; oceans; seaweeds; sediments |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Pancrustacea, Aves |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Photobacterium damselae subsp. damselae strain KC-Na-1 plasmid
Gene Summary
Adenine Count
24830 bp
Thymine Count
23536 bp
Guanine Count
16496 bp
Cytosine Count
16140 bp
Genome Length
81002 bp
Protein-coding Genes
81 genes
Non-Coding Genes
0 genes
# of Chromosomes/Plasmids
5
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| duf1853 family protein | CAY62_RS04115 | Not Available | Negative | 893618 - 894406 | 31071.8 |
| duf2517 family protein | CAY62_RS04120 | Not Available | Positive | 894526 - 894732 | 8007.94 |
| nif3-like dinuclear metal center hexameric protein | CAY62_RS04125 | Not Available | Positive | 894914 - 895672 | 27769.1 |
| citrate synthase | CAY62_RS04130 | Not Available | Negative | 895797 - 897086 | 48261.6 |
| succinate dehydrogenase cytochrome b556 subunit | CAY62_RS04135 | Not Available | Positive | 897473 - 897874 | 14421.3 |
| succinate dehydrogenase, hydrophobic membrane anchor protein | CAY62_RS04140 | Not Available | Positive | 897868 - 898215 | 12937.4 |
| succinate dehydrogenase flavoprotein subunit | CAY62_RS04145 | Not Available | Positive | 898216 - 899982 | 64427.6 |
| succinate dehydrogenase iron-sulfur subunit | CAY62_RS04150 | Not Available | Positive | 899997 - 900707 | 26380.1 |
| 2-oxoglutarate dehydrogenase e1 component | CAY62_RS04155 | Not Available | Positive | 900859 - 903681 | 106259.0 |
| 2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase | CAY62_RS04160 | Not Available | Positive | 903713 - 904924 | 44362.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Haemorrhagic septicemia | Causes | PMC12895208 |
| Skin lesions | Causes | PMC12895208 |
| Necrotizing fasciitis | Causes | PMC12895208 |
| Soft-tissue infection | Causes | PMC8231020 |
| Chronic suppurative pneumonia | Causes | PMC9796189 |
| Splenic lymphoid depletion | Causes | PMC9796189 |
| Wound infections | Causes | PMC9796189 |
| Hemorrhagic septicemia | Causes | PMC9796189 |
| Pneumonia | Causes | PMC9796189 |


