Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Vibrionales
Family
Vibrionaceae
Genus
Photobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Vibrionales |
| Family | Vibrionaceae |
| Genus | Photobacterium |
| Species | Photobacterium damselae |
| Strain | subsp. damselae strain KC-Na-1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | mesophilic |
| Habitat | coastal waters; estuaries; Marine; oceans; seaweeds; sediments |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Pancrustacea, Aves |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Photobacterium damselae subsp. damselae strain KC-Na-1 plasmid
Gene Summary
Adenine Count
24830 bp
Thymine Count
23536 bp
Guanine Count
16496 bp
Cytosine Count
16140 bp
Genome Length
81002 bp
Protein-coding Genes
81 genes
Non-Coding Genes
0 genes
# of Chromosomes/Plasmids
5
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| is21-like element helper atpase istb | CAY62_RS04065 | Not Available | Positive | 882238 - 882996 | 28681.8 |
| beta-n-acetylhexosaminidase | CAY62_RS04070 | Not Available | Positive | 883344 - 886007 | 98048.4 |
| glutamine--trna ligase | CAY62_RS04075 | Not Available | Positive | 886241 - 887908 | 63590.2 |
| ferric iron uptake transcriptional regulator | CAY62_RS04080 | Not Available | Negative | 888186 - 888632 | 16850.0 |
| duf4442 domain-containing protein | CAY62_RS04085 | Not Available | Positive | 888825 - 889286 | 17600.3 |
| flavodoxin flda | CAY62_RS04090 | Not Available | Negative | 889402 - 889929 | 19721.0 |
| duf2788 domain-containing protein | CAY62_RS04095 | Not Available | Negative | 890085 - 890306 | 8115.29 |
| alpha/beta fold hydrolase | CAY62_RS04100 | Not Available | Negative | 890393 - 891154 | 28830.7 |
| replication initiation negative regulator seqa | CAY62_RS04105 | Not Available | Positive | 891257 - 891802 | 20430.9 |
| phosphoglucomutase (alpha-d-glucose-1,6-bisphosphate-dependent) | CAY62_RS04110 | Not Available | Positive | 891852 - 893498 | 59076.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Haemorrhagic septicemia | Causes | PMC12895208 |
| Skin lesions | Causes | PMC12895208 |
| Necrotizing fasciitis | Causes | PMC12895208 |
| Soft-tissue infection | Causes | PMC8231020 |
| Chronic suppurative pneumonia | Causes | PMC9796189 |
| Splenic lymphoid depletion | Causes | PMC9796189 |
| Wound infections | Causes | PMC9796189 |
| Hemorrhagic septicemia | Causes | PMC9796189 |
| Pneumonia | Causes | PMC9796189 |


