Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Vibrionales
Family
Vibrionaceae
Genus
Photobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Vibrionales |
| Family | Vibrionaceae |
| Genus | Photobacterium |
| Species | Photobacterium damselae |
| Strain | subsp. damselae strain KC-Na-1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | mesophilic |
| Habitat | coastal waters; estuaries; Marine; oceans; seaweeds; sediments |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Pancrustacea, Aves |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Photobacterium damselae subsp. damselae strain KC-Na-1 plasmid
Gene Summary
Adenine Count
24830 bp
Thymine Count
23536 bp
Guanine Count
16496 bp
Cytosine Count
16140 bp
Genome Length
81002 bp
Protein-coding Genes
81 genes
Non-Coding Genes
0 genes
# of Chromosomes/Plasmids
5
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| trar/dksa c4-type zinc finger protein | CAY62_RS03965 | Not Available | Negative | 858003 - 858368 | 13751.3 |
| yban family protein | CAY62_RS03970 | Not Available | Positive | 858698 - 859096 | 14874.0 |
| adenine phosphoribosyltransferase | CAY62_RS03975 | Not Available | Positive | 859268 - 859813 | 19747.9 |
| dna polymerase iii subunit gamma/tau | CAY62_RS03980 | Not Available | Positive | 860062 - 862209 | 78524.0 |
| ybab/ebfc family nucleoid-associated protein | CAY62_RS03985 | Not Available | Positive | 862334 - 862663 | 12045.7 |
| recombination mediator recr | CAY62_RS03990 | Not Available | Positive | 862667 - 863269 | 21663.0 |
| regulatory protein toxs | CAY62_RS03995 | Not Available | Negative | 863375 - 863884 | 19880.0 |
| transcriptional regulator | CAY62_RS04000 | Not Available | Negative | 863929 - 864828 | 33318.6 |
| molecular chaperone htpg | CAY62_RS04005 | Not Available | Positive | 865018 - 866919 | 72282.2 |
| adenylate kinase | CAY62_RS04010 | Not Available | Positive | 867055 - 867699 | 23116.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Haemorrhagic septicemia | Causes | PMC12895208 |
| Skin lesions | Causes | PMC12895208 |
| Necrotizing fasciitis | Causes | PMC12895208 |
| Soft-tissue infection | Causes | PMC8231020 |
| Chronic suppurative pneumonia | Causes | PMC9796189 |
| Splenic lymphoid depletion | Causes | PMC9796189 |
| Wound infections | Causes | PMC9796189 |
| Hemorrhagic septicemia | Causes | PMC9796189 |
| Pneumonia | Causes | PMC9796189 |


