Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Vibrionales
Family
Vibrionaceae
Genus
Photobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Vibrionales |
| Family | Vibrionaceae |
| Genus | Photobacterium |
| Species | Photobacterium damselae |
| Strain | subsp. damselae strain KC-Na-1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | mesophilic |
| Habitat | coastal waters; estuaries; Marine; oceans; seaweeds; sediments |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Pancrustacea, Aves |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Photobacterium damselae subsp. damselae strain KC-Na-1 plasmid
Gene Summary
Adenine Count
24830 bp
Thymine Count
23536 bp
Guanine Count
16496 bp
Cytosine Count
16140 bp
Genome Length
81002 bp
Protein-coding Genes
81 genes
Non-Coding Genes
0 genes
# of Chromosomes/Plasmids
5
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | CAY62_RS22180 | Not Available | Negative | 835369 - 835491 | 4565.67 |
| hlyd family secretion protein | CAY62_RS03870 | Not Available | Positive | 836010 - 837053 | 37184.7 |
| dha2 family efflux mfs transporter permease subunit | CAY62_RS03875 | Not Available | Positive | 837056 - 838594 | 56025.1 |
| 5'-methylthioadenosine/s-adenosylhomocysteine nucleosidase | CAY62_RS03880 | Not Available | Negative | 838694 - 839503 | 29800.6 |
| amino acid abc transporter atp-binding protein | CAY62_RS03885 | Not Available | Positive | 839902 - 840476 | 20776.1 |
| rna-guided endonuclease insq/tnpb family protein | CAY62_RS03890 | Not Available | Negative | 840418 - 841305 | 33499.4 |
| is200/is605 family transposase | CAY62_RS03895 | Not Available | Positive | 841363 - 841791 | 16199.8 |
| amino acid abc transporter atp-binding protein | CAY62_RS03900 | Not Available | Positive | 841858 - 842575 | 25697.6 |
| copper-binding protein | CAY62_RS03905 | Not Available | Negative | 842678 - 843178 | 18535.3 |
| efflux rnd transporter permease subunit | CAY62_RS03910 | Not Available | Negative | 843304 - 846429 | 114071.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Haemorrhagic septicemia | Causes | PMC12895208 |
| Skin lesions | Causes | PMC12895208 |
| Necrotizing fasciitis | Causes | PMC12895208 |
| Soft-tissue infection | Causes | PMC8231020 |
| Chronic suppurative pneumonia | Causes | PMC9796189 |
| Splenic lymphoid depletion | Causes | PMC9796189 |
| Wound infections | Causes | PMC9796189 |
| Hemorrhagic septicemia | Causes | PMC9796189 |
| Pneumonia | Causes | PMC9796189 |


