Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Vibrionales
Family
Vibrionaceae
Genus
Photobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Vibrionales |
| Family | Vibrionaceae |
| Genus | Photobacterium |
| Species | Photobacterium damselae |
| Strain | subsp. damselae strain KC-Na-1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | mesophilic |
| Habitat | coastal waters; estuaries; Marine; oceans; seaweeds; sediments |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Pancrustacea, Aves |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Photobacterium damselae subsp. damselae strain KC-Na-1 plasmid
Gene Summary
Adenine Count
24830 bp
Thymine Count
23536 bp
Guanine Count
16496 bp
Cytosine Count
16140 bp
Genome Length
81002 bp
Protein-coding Genes
81 genes
Non-Coding Genes
0 genes
# of Chromosomes/Plasmids
5
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| 50s ribosomal protein l3 n(5)-glutamine methyltransferase | CAY62_RS03775 | Not Available | Positive | 818690 - 819622 | 35506.2 |
| 7-cyano-7-deazaguanine synthase quec | CAY62_RS03780 | Not Available | Negative | 819750 - 820454 | 25886.8 |
| plp-dependent cysteine synthase family protein | CAY62_RS03785 | Not Available | Negative | 820840 - 821928 | 40753.2 |
| lrp/asnc family transcriptional regulator | CAY62_RS03790 | Not Available | Positive | 822179 - 822640 | 17592.3 |
| acyl-coa thioesterase ii | CAY62_RS03795 | Not Available | Negative | 822785 - 823651 | 32705.2 |
| ybay family lipoprotein | CAY62_RS03800 | Not Available | Positive | 823786 - 824208 | 15287.3 |
| mgmt family protein | CAY62_RS03805 | Not Available | Negative | 824537 - 824842 | 11532.7 |
| hypothetical protein | CAY62_RS03810 | Not Available | Positive | 824954 - 825691 | 26040.1 |
| Ncrna_class:srp_rna | Not Available | Not Available | Positive | 825830 - 825926 | Not Available |
| is630 family transposase | CAY62_RS03820 | Not Available | Positive | 826258 - 827247 | 37379.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Haemorrhagic septicemia | Causes | PMC12895208 |
| Skin lesions | Causes | PMC12895208 |
| Necrotizing fasciitis | Causes | PMC12895208 |
| Soft-tissue infection | Causes | PMC8231020 |
| Chronic suppurative pneumonia | Causes | PMC9796189 |
| Splenic lymphoid depletion | Causes | PMC9796189 |
| Wound infections | Causes | PMC9796189 |
| Hemorrhagic septicemia | Causes | PMC9796189 |
| Pneumonia | Causes | PMC9796189 |


