Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Vibrionales
Family
Vibrionaceae
Genus
Photobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Vibrionales |
| Family | Vibrionaceae |
| Genus | Photobacterium |
| Species | Photobacterium damselae |
| Strain | subsp. damselae strain KC-Na-1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | mesophilic |
| Habitat | coastal waters; estuaries; Marine; oceans; seaweeds; sediments |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Pancrustacea, Aves |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Photobacterium damselae subsp. damselae strain KC-Na-1 plasmid
Gene Summary
Adenine Count
24830 bp
Thymine Count
23536 bp
Guanine Count
16496 bp
Cytosine Count
16140 bp
Genome Length
81002 bp
Protein-coding Genes
81 genes
Non-Coding Genes
0 genes
# of Chromosomes/Plasmids
5
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| mind/para family protein | CAY62_RS03625 | Not Available | Positive | 786619 - 787506 | 32094.2 |
| rna polymerase sigma factor flia | CAY62_RS03630 | Not Available | Positive | 787499 - 788221 | 27126.3 |
| chemotaxis response regulator chey | CAY62_RS03635 | Not Available | Positive | 788277 - 788648 | 14003.2 |
| protein phosphatase chez | CAY62_RS03640 | Not Available | Positive | 788685 - 789407 | 27250.6 |
| chemotaxis protein chea | CAY62_RS03645 | Not Available | Positive | 789417 - 791720 | 83117.4 |
| chemotaxis response regulator protein-glutamate methylesterase | CAY62_RS03650 | Not Available | Positive | 791795 - 793048 | 45009.9 |
| para family protein | CAY62_RS03655 | Not Available | Positive | 793060 - 793836 | 28964.5 |
| chemotaxis protein chew | CAY62_RS21880 | Not Available | Positive | 793826 - 795028 | 45007.4 |
| chemotaxis protein chew | CAY62_RS03665 | Not Available | Positive | 795047 - 795541 | 18361.8 |
| duf2802 domain-containing protein | CAY62_RS03670 | Not Available | Positive | 795541 - 795975 | 16601.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Haemorrhagic septicemia | Causes | PMC12895208 |
| Skin lesions | Causes | PMC12895208 |
| Necrotizing fasciitis | Causes | PMC12895208 |
| Soft-tissue infection | Causes | PMC8231020 |
| Chronic suppurative pneumonia | Causes | PMC9796189 |
| Splenic lymphoid depletion | Causes | PMC9796189 |
| Wound infections | Causes | PMC9796189 |
| Hemorrhagic septicemia | Causes | PMC9796189 |
| Pneumonia | Causes | PMC9796189 |


