Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Vibrionales
Family
Vibrionaceae
Genus
Photobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Vibrionales |
| Family | Vibrionaceae |
| Genus | Photobacterium |
| Species | Photobacterium damselae |
| Strain | subsp. damselae strain KC-Na-1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | mesophilic |
| Habitat | coastal waters; estuaries; Marine; oceans; seaweeds; sediments |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Pancrustacea, Aves |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Photobacterium damselae subsp. damselae strain KC-Na-1 plasmid
Gene Summary
Adenine Count
24830 bp
Thymine Count
23536 bp
Guanine Count
16496 bp
Cytosine Count
16140 bp
Genome Length
81002 bp
Protein-coding Genes
81 genes
Non-Coding Genes
0 genes
# of Chromosomes/Plasmids
5
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| sigma-54 dependent transcriptional regulator | CAY62_RS03520 | Not Available | Positive | 765264 - 766709 | 54234.5 |
| sensor histidine kinase | CAY62_RS03530 | Not Available | Positive | 767032 - 768045 | 36827.1 |
| sigma-54-dependent transcriptional regulator | CAY62_RS03535 | Not Available | Positive | 768049 - 769509 | 54056.4 |
| flagellar hook-basal body complex protein flie | CAY62_RS03540 | Not Available | Positive | 769617 - 769928 | 11208.4 |
| flagellar basal-body ms-ring/collar protein flif | CAY62_RS03545 | Not Available | Positive | 770024 - 771712 | 61910.4 |
| flagellar motor switch protein flig | CAY62_RS03550 | Not Available | Positive | 771702 - 772742 | 38337.9 |
| flagellar assembly protein flih | CAY62_RS03555 | Not Available | Positive | 772754 - 773569 | 30439.3 |
| flagellar protein export atpase flii | CAY62_RS03560 | Not Available | Positive | 773566 - 774879 | 46538.6 |
| flagellar export protein flij | CAY62_RS03565 | Not Available | Positive | 774974 - 775426 | 17993.4 |
| flagellar hook-length control protein flik | CAY62_RS03570 | Not Available | Positive | 775615 - 777291 | 59787.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Haemorrhagic septicemia | Causes | PMC12895208 |
| Skin lesions | Causes | PMC12895208 |
| Necrotizing fasciitis | Causes | PMC12895208 |
| Soft-tissue infection | Causes | PMC8231020 |
| Chronic suppurative pneumonia | Causes | PMC9796189 |
| Splenic lymphoid depletion | Causes | PMC9796189 |
| Wound infections | Causes | PMC9796189 |
| Hemorrhagic septicemia | Causes | PMC9796189 |
| Pneumonia | Causes | PMC9796189 |


