Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Vibrionales
Family
Vibrionaceae
Genus
Photobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Vibrionales |
| Family | Vibrionaceae |
| Genus | Photobacterium |
| Species | Photobacterium damselae |
| Strain | subsp. damselae strain KC-Na-1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | mesophilic |
| Habitat | coastal waters; estuaries; Marine; oceans; seaweeds; sediments |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Pancrustacea, Aves |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Photobacterium damselae subsp. damselae strain KC-Na-1 plasmid
Gene Summary
Adenine Count
24830 bp
Thymine Count
23536 bp
Guanine Count
16496 bp
Cytosine Count
16140 bp
Genome Length
81002 bp
Protein-coding Genes
81 genes
Non-Coding Genes
0 genes
# of Chromosomes/Plasmids
5
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| flagellar basal body p-ring protein flgi | CAY62_RS03470 | Not Available | Positive | 753949 - 755034 | 37995.7 |
| flagellar assembly peptidoglycan hydrolase flgj | CAY62_RS03475 | Not Available | Positive | 755053 - 756051 | 37053.7 |
| flagellar hook protein | CAY62_RS03480 | Not Available | Negative | 756108 - 756296 | 6778.07 |
| flagellar hook-associated protein flgk | CAY62_RS03485 | Not Available | Positive | 756551 - 758539 | 71146.3 |
| flagellar hook-associated protein flgl | CAY62_RS03490 | Not Available | Positive | 758553 - 759791 | 45036.3 |
| flagellin | CAY62_RS03495 | Not Available | Positive | 760055 - 761482 | 48548.4 |
| flagellin lysine-n-methylase | CAY62_RS03500 | Not Available | Positive | 761629 - 762819 | 45815.1 |
| flagellar filament capping protein flid | CAY62_RS03505 | Not Available | Positive | 762865 - 764253 | 50424.1 |
| hypothetical protein | CAY62_RS03510 | Not Available | Positive | 764268 - 764567 | 11754.1 |
| flagellar export chaperone flis | CAY62_RS03515 | Not Available | Positive | 764577 - 764972 | 14684.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Haemorrhagic septicemia | Causes | PMC12895208 |
| Skin lesions | Causes | PMC12895208 |
| Necrotizing fasciitis | Causes | PMC12895208 |
| Soft-tissue infection | Causes | PMC8231020 |
| Chronic suppurative pneumonia | Causes | PMC9796189 |
| Splenic lymphoid depletion | Causes | PMC9796189 |
| Wound infections | Causes | PMC9796189 |
| Hemorrhagic septicemia | Causes | PMC9796189 |
| Pneumonia | Causes | PMC9796189 |


