Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Vibrionales
Family
Vibrionaceae
Genus
Photobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Vibrionales |
| Family | Vibrionaceae |
| Genus | Photobacterium |
| Species | Photobacterium damselae |
| Strain | subsp. damselae strain KC-Na-1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | mesophilic |
| Habitat | coastal waters; estuaries; Marine; oceans; seaweeds; sediments |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Pancrustacea, Aves |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Photobacterium damselae subsp. damselae strain KC-Na-1 plasmid
Gene Summary
Adenine Count
24830 bp
Thymine Count
23536 bp
Guanine Count
16496 bp
Cytosine Count
16140 bp
Genome Length
81002 bp
Protein-coding Genes
81 genes
Non-Coding Genes
0 genes
# of Chromosomes/Plasmids
5
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | CAY62_RS03320 | Not Available | Positive | 726346 - 726747 | 14744.5 |
| dyp-type peroxidase | CAY62_RS03325 | Not Available | Positive | 727360 - 728256 | 33452.6 |
| pts glucose transporter subunit iia | CAY62_RS03330 | Not Available | Negative | 728379 - 728888 | 18096.8 |
| phosphoenolpyruvate-protein phosphotransferase ptsi | CAY62_RS03335 | Not Available | Negative | 728929 - 730656 | 63762.6 |
| hpr family phosphocarrier protein | CAY62_RS03340 | Not Available | Negative | 730712 - 730999 | 10129.2 |
| cysteine synthase a | CAY62_RS03345 | Not Available | Negative | 731317 - 732285 | 34306.2 |
| sulfate transporter cysz | CAY62_RS03350 | Not Available | Negative | 732556 - 733314 | 28880.9 |
| cell division protein zipa | CAY62_RS03355 | Not Available | Positive | 733645 - 734802 | 42096.3 |
| nad-dependent dna ligase liga | CAY62_RS03360 | Not Available | Positive | 734956 - 736971 | 74554.0 |
| porin | CAY62_RS03365 | Not Available | Positive | 737554 - 738960 | 51769.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Haemorrhagic septicemia | Causes | PMC12895208 |
| Skin lesions | Causes | PMC12895208 |
| Necrotizing fasciitis | Causes | PMC12895208 |
| Soft-tissue infection | Causes | PMC8231020 |
| Chronic suppurative pneumonia | Causes | PMC9796189 |
| Splenic lymphoid depletion | Causes | PMC9796189 |
| Wound infections | Causes | PMC9796189 |
| Hemorrhagic septicemia | Causes | PMC9796189 |
| Pneumonia | Causes | PMC9796189 |


