Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Vibrionales
Family
Vibrionaceae
Genus
Photobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Vibrionales |
| Family | Vibrionaceae |
| Genus | Photobacterium |
| Species | Photobacterium damselae |
| Strain | subsp. damselae strain KC-Na-1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | mesophilic |
| Habitat | coastal waters; estuaries; Marine; oceans; seaweeds; sediments |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Pancrustacea, Aves |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Photobacterium damselae subsp. damselae strain KC-Na-1 plasmid
Gene Summary
Adenine Count
24830 bp
Thymine Count
23536 bp
Guanine Count
16496 bp
Cytosine Count
16140 bp
Genome Length
81002 bp
Protein-coding Genes
81 genes
Non-Coding Genes
0 genes
# of Chromosomes/Plasmids
5
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| ferredoxin-type protein napf | CAY62_RS03270 | Not Available | Positive | 719650 - 720144 | 18347.8 |
| chaperone napd | CAY62_RS03275 | Not Available | Positive | 720147 - 720419 | 10217.0 |
| periplasmic nitrate reductase subunit alpha | CAY62_RS03280 | Not Available | Positive | 720416 - 722902 | 93306.4 |
| nitrate reductase cytochrome c-type subunit | CAY62_RS03285 | Not Available | Positive | 722974 - 723489 | 18839.6 |
| napc/nirt family cytochrome c | CAY62_RS03290 | Not Available | Positive | 723504 - 724079 | 21777.1 |
| tigr02808 family protein | CAY62_RS03295 | Not Available | Positive | 724094 - 724231 | 4890.16 |
| hypothetical protein | CAY62_RS03300 | Not Available | Negative | 724279 - 724500 | 8543.56 |
| duf1499 domain-containing protein | CAY62_RS03305 | Not Available | Negative | 724610 - 725056 | 16978.2 |
| duf2956 domain-containing protein | CAY62_RS03310 | Not Available | Negative | 725069 - 725404 | 12951.7 |
| duf2919 domain-containing protein | CAY62_RS03315 | Not Available | Positive | 725933 - 726340 | 15566.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Haemorrhagic septicemia | Causes | PMC12895208 |
| Skin lesions | Causes | PMC12895208 |
| Necrotizing fasciitis | Causes | PMC12895208 |
| Soft-tissue infection | Causes | PMC8231020 |
| Chronic suppurative pneumonia | Causes | PMC9796189 |
| Splenic lymphoid depletion | Causes | PMC9796189 |
| Wound infections | Causes | PMC9796189 |
| Hemorrhagic septicemia | Causes | PMC9796189 |
| Pneumonia | Causes | PMC9796189 |


