Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Vibrionales
Family
Vibrionaceae
Genus
Photobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Vibrionales |
| Family | Vibrionaceae |
| Genus | Photobacterium |
| Species | Photobacterium damselae |
| Strain | subsp. damselae strain KC-Na-1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | mesophilic |
| Habitat | coastal waters; estuaries; Marine; oceans; seaweeds; sediments |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Pancrustacea, Aves |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Photobacterium damselae subsp. damselae strain KC-Na-1 plasmid
Gene Summary
Adenine Count
24830 bp
Thymine Count
23536 bp
Guanine Count
16496 bp
Cytosine Count
16140 bp
Genome Length
81002 bp
Protein-coding Genes
81 genes
Non-Coding Genes
0 genes
# of Chromosomes/Plasmids
5
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| esterase frsa | CAY62_RS03220 | Not Available | Positive | 709986 - 711248 | 47092.6 |
| sigma factor-binding protein crl | CAY62_RS03225 | Not Available | Positive | 711410 - 711805 | 15383.0 |
| glutamate 5-kinase | CAY62_RS03230 | Not Available | Positive | 712024 - 713172 | 40929.6 |
| glutamate-5-semialdehyde dehydrogenase | CAY62_RS03235 | Not Available | Positive | 713265 - 714521 | 45167.3 |
| duf2897 family protein | CAY62_RS03240 | Not Available | Negative | 714570 - 714776 | 7946.59 |
| succinyl-diaminopimelate desuccinylase | CAY62_RS03245 | Not Available | Negative | 714856 - 715989 | 41036.8 |
| arsc family reductase | CAY62_RS03250 | Not Available | Negative | 716000 - 716359 | 13728.6 |
| helix-turn-helix domain-containing protein | CAY62_RS03255 | Not Available | Positive | 716693 - 716971 | 10771.0 |
| response regulator | CAY62_RS03260 | Not Available | Negative | 717053 - 717679 | 22665.3 |
| nitrate/nitrite two-component system sensor histidine kinase narq | CAY62_RS03265 | Not Available | Negative | 717672 - 719378 | 64597.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Haemorrhagic septicemia | Causes | PMC12895208 |
| Skin lesions | Causes | PMC12895208 |
| Necrotizing fasciitis | Causes | PMC12895208 |
| Soft-tissue infection | Causes | PMC8231020 |
| Chronic suppurative pneumonia | Causes | PMC9796189 |
| Splenic lymphoid depletion | Causes | PMC9796189 |
| Wound infections | Causes | PMC9796189 |
| Hemorrhagic septicemia | Causes | PMC9796189 |
| Pneumonia | Causes | PMC9796189 |


