Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Vibrionales
Family
Vibrionaceae
Genus
Photobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Vibrionales |
| Family | Vibrionaceae |
| Genus | Photobacterium |
| Species | Photobacterium damselae |
| Strain | subsp. damselae strain KC-Na-1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | mesophilic |
| Habitat | coastal waters; estuaries; Marine; oceans; seaweeds; sediments |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Pancrustacea, Aves |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Photobacterium damselae subsp. damselae strain KC-Na-1 plasmid
Gene Summary
Adenine Count
24830 bp
Thymine Count
23536 bp
Guanine Count
16496 bp
Cytosine Count
16140 bp
Genome Length
81002 bp
Protein-coding Genes
81 genes
Non-Coding Genes
0 genes
# of Chromosomes/Plasmids
5
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| is21 family transposase | CAY62_RS02965 | Not Available | Negative | 656477 - 657520 | 40000.6 |
| amino acid abc transporter atp-binding protein | CAY62_RS02970 | Not Available | Positive | 657610 - 658440 | 29466.1 |
| s-formylglutathione hydrolase | CAY62_RS02975 | Not Available | Negative | 658583 - 659428 | 31486.0 |
| s-(hydroxymethyl)glutathione dehydrogenase/class iii alcohol dehydrogenase | CAY62_RS02980 | Not Available | Negative | 659520 - 660650 | 40246.5 |
| lysr substrate-binding domain-containing protein | CAY62_RS02985 | Not Available | Positive | 660873 - 661760 | 33419.4 |
| trna adenosine(34) deaminase tada | CAY62_RS02990 | Not Available | Positive | 661796 - 662308 | 18758.5 |
| hypothetical protein | CAY62_RS21490 | Not Available | Negative | 662383 - 662529 | 5787.16 |
| membrane-bound lytic murein transglycosylase mltf | CAY62_RS02995 | Not Available | Negative | 662853 - 664349 | 56561.4 |
| phosphoribosylformylglycinamidine synthase | CAY62_RS03000 | Not Available | Positive | 664737 - 668642 | 141936.0 |
| hypothetical protein | CAY62_RS03005 | Not Available | Positive | 668977 - 669390 | 14980.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Haemorrhagic septicemia | Causes | PMC12895208 |
| Skin lesions | Causes | PMC12895208 |
| Necrotizing fasciitis | Causes | PMC12895208 |
| Soft-tissue infection | Causes | PMC8231020 |
| Chronic suppurative pneumonia | Causes | PMC9796189 |
| Splenic lymphoid depletion | Causes | PMC9796189 |
| Wound infections | Causes | PMC9796189 |
| Hemorrhagic septicemia | Causes | PMC9796189 |
| Pneumonia | Causes | PMC9796189 |


