Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Vibrionales
Family
Vibrionaceae
Genus
Photobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Vibrionales |
| Family | Vibrionaceae |
| Genus | Photobacterium |
| Species | Photobacterium damselae |
| Strain | subsp. damselae strain KC-Na-1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | mesophilic |
| Habitat | coastal waters; estuaries; Marine; oceans; seaweeds; sediments |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Pancrustacea, Aves |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Photobacterium damselae subsp. damselae strain KC-Na-1 plasmid
Gene Summary
Adenine Count
24830 bp
Thymine Count
23536 bp
Guanine Count
16496 bp
Cytosine Count
16140 bp
Genome Length
81002 bp
Protein-coding Genes
81 genes
Non-Coding Genes
0 genes
# of Chromosomes/Plasmids
5
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| yfgm family protein | CAY62_RS02915 | Not Available | Positive | 644374 - 644988 | 22332.3 |
| outer membrane protein assembly factor bamb | CAY62_RS02920 | Not Available | Positive | 645000 - 646163 | 41238.7 |
| ribosome biogenesis gtpase der | CAY62_RS02925 | Not Available | Positive | 646377 - 647876 | 56033.2 |
| metal-dependent hydrolase | CAY62_RS02930 | Not Available | Positive | 647936 - 648808 | 33038.0 |
| zinc ribbon domain-containing protein | CAY62_RS02935 | Not Available | Positive | 649287 - 649523 | 8808.39 |
| exodeoxyribonuclease vii large subunit | CAY62_RS02940 | Not Available | Negative | 649641 - 650987 | 50318.7 |
| imp dehydrogenase | CAY62_RS02945 | Not Available | Positive | 651298 - 652761 | 51933.6 |
| glutamine-hydrolyzing gmp synthase | CAY62_RS02950 | Not Available | Positive | 652876 - 654459 | 58668.2 |
| amino acid abc transporter atp-binding protein | CAY62_RS02955 | Not Available | Positive | 654928 - 655671 | 26167.4 |
| is21-like element helper atpase istb | CAY62_RS02960 | Not Available | Negative | 655732 - 656490 | 28681.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Haemorrhagic septicemia | Causes | PMC12895208 |
| Skin lesions | Causes | PMC12895208 |
| Necrotizing fasciitis | Causes | PMC12895208 |
| Soft-tissue infection | Causes | PMC8231020 |
| Chronic suppurative pneumonia | Causes | PMC9796189 |
| Splenic lymphoid depletion | Causes | PMC9796189 |
| Wound infections | Causes | PMC9796189 |
| Hemorrhagic septicemia | Causes | PMC9796189 |
| Pneumonia | Causes | PMC9796189 |


