Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Vibrionales
Family
Vibrionaceae
Genus
Photobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Vibrionales |
| Family | Vibrionaceae |
| Genus | Photobacterium |
| Species | Photobacterium damselae |
| Strain | subsp. damselae strain KC-Na-1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | mesophilic |
| Habitat | coastal waters; estuaries; Marine; oceans; seaweeds; sediments |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Pancrustacea, Aves |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Photobacterium damselae subsp. damselae strain KC-Na-1 plasmid
Gene Summary
Adenine Count
24830 bp
Thymine Count
23536 bp
Guanine Count
16496 bp
Cytosine Count
16140 bp
Genome Length
81002 bp
Protein-coding Genes
81 genes
Non-Coding Genes
0 genes
# of Chromosomes/Plasmids
5
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| isc system 2fe-2s type ferredoxin | CAY62_RS02865 | Not Available | Positive | 634542 - 634880 | 12307.5 |
| fe-s cluster assembly protein iscx | CAY62_RS02870 | Not Available | Positive | 634943 - 635137 | 7612.94 |
| aminopeptidase pepb | CAY62_RS02875 | Not Available | Positive | 635425 - 636711 | 45745.6 |
| aminopeptidase pepb | CAY62_RS02880 | Not Available | Positive | 636770 - 638047 | 45569.7 |
| nucleoside-diphosphate kinase | CAY62_RS02885 | Not Available | Positive | 638149 - 638574 | 15703.8 |
| bifunctional trna (adenosine(37)-c2)-methyltransferase trmg/ribosomal rna large subunit methyltransferase rlmn | CAY62_RS02890 | Not Available | Positive | 638957 - 640075 | 42007.8 |
| type iv pilus biogenesis/stability protein pilw | CAY62_RS02895 | Not Available | Positive | 640129 - 640884 | 28753.2 |
| cytoskeleton protein rodz | CAY62_RS02900 | Not Available | Positive | 640877 - 641860 | 35733.6 |
| flavodoxin-dependent (e)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase | CAY62_RS02905 | Not Available | Positive | 641874 - 642995 | 41033.4 |
| histidine--trna ligase | CAY62_RS02910 | Not Available | Positive | 643092 - 644360 | 47379.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Haemorrhagic septicemia | Causes | PMC12895208 |
| Skin lesions | Causes | PMC12895208 |
| Necrotizing fasciitis | Causes | PMC12895208 |
| Soft-tissue infection | Causes | PMC8231020 |
| Chronic suppurative pneumonia | Causes | PMC9796189 |
| Splenic lymphoid depletion | Causes | PMC9796189 |
| Wound infections | Causes | PMC9796189 |
| Hemorrhagic septicemia | Causes | PMC9796189 |
| Pneumonia | Causes | PMC9796189 |


