Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Vibrionales
Family
Vibrionaceae
Genus
Photobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Vibrionales |
| Family | Vibrionaceae |
| Genus | Photobacterium |
| Species | Photobacterium damselae |
| Strain | subsp. damselae strain KC-Na-1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | mesophilic |
| Habitat | coastal waters; estuaries; Marine; oceans; seaweeds; sediments |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Pancrustacea, Aves |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Photobacterium damselae subsp. damselae strain KC-Na-1 plasmid
Gene Summary
Adenine Count
24830 bp
Thymine Count
23536 bp
Guanine Count
16496 bp
Cytosine Count
16140 bp
Genome Length
81002 bp
Protein-coding Genes
81 genes
Non-Coding Genes
0 genes
# of Chromosomes/Plasmids
5
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| cold-shock protein | CAY62_RS02815 | Not Available | Negative | 625875 - 626087 | 7579.91 |
| amino acid abc transporter atp-binding protein | CAY62_RS02820 | Not Available | Negative | 626622 - 627424 | 28962.9 |
| inositol-1-monophosphatase | CAY62_RS02825 | Not Available | Negative | 627513 - 628316 | 28930.7 |
| trna (cytosine(32)/uridine(32)-2'-o)-methyltransferase trmj | CAY62_RS02830 | Not Available | Positive | 628586 - 629317 | 26869.7 |
| fe-s cluster assembly transcriptional regulator iscr | CAY62_RS02835 | Not Available | Positive | 629428 - 629949 | 18533.0 |
| iscs subfamily cysteine desulfurase | CAY62_RS02840 | Not Available | Positive | 629981 - 631195 | 44906.6 |
| fe-s cluster assembly scaffold iscu | CAY62_RS02845 | Not Available | Positive | 631233 - 631619 | 13687.2 |
| iron-sulfur cluster assembly protein isca | CAY62_RS02850 | Not Available | Positive | 631637 - 631960 | 11528.7 |
| co-chaperone hscb | CAY62_RS02855 | Not Available | Positive | 632036 - 632551 | 20233.0 |
| fe-s protein assembly chaperone hsca | CAY62_RS02860 | Not Available | Positive | 632686 - 634539 | 65979.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Haemorrhagic septicemia | Causes | PMC12895208 |
| Skin lesions | Causes | PMC12895208 |
| Necrotizing fasciitis | Causes | PMC12895208 |
| Soft-tissue infection | Causes | PMC8231020 |
| Chronic suppurative pneumonia | Causes | PMC9796189 |
| Splenic lymphoid depletion | Causes | PMC9796189 |
| Wound infections | Causes | PMC9796189 |
| Hemorrhagic septicemia | Causes | PMC9796189 |
| Pneumonia | Causes | PMC9796189 |


