Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Vibrionales
Family
Vibrionaceae
Genus
Photobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Vibrionales |
| Family | Vibrionaceae |
| Genus | Photobacterium |
| Species | Photobacterium damselae |
| Strain | subsp. damselae strain KC-Na-1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | mesophilic |
| Habitat | coastal waters; estuaries; Marine; oceans; seaweeds; sediments |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Pancrustacea, Aves |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Photobacterium damselae subsp. damselae strain KC-Na-1 plasmid
Gene Summary
Adenine Count
24830 bp
Thymine Count
23536 bp
Guanine Count
16496 bp
Cytosine Count
16140 bp
Genome Length
81002 bp
Protein-coding Genes
81 genes
Non-Coding Genes
0 genes
# of Chromosomes/Plasmids
5
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| abc transporter permease subunit | CAY62_RS02715 | Not Available | Positive | 602509 - 604764 | 83198.3 |
| phosphate abc transporter permease psta | CAY62_RS02720 | Not Available | Positive | 604794 - 606431 | 61024.6 |
| phosphate abc transporter atp-binding protein pstb | CAY62_RS02725 | Not Available | Positive | 606458 - 607276 | 30381.5 |
| phosphate signaling complex protein phou | CAY62_RS02730 | Not Available | Positive | 607291 - 608001 | 26731.4 |
| copper homeostasis protein cutc | CAY62_RS02735 | Not Available | Negative | 608057 - 608794 | 26474.1 |
| peroxiredoxin c | CAY62_RS02740 | Not Available | Negative | 609051 - 609659 | 22251.4 |
| hydrogen peroxide-inducible genes activator | CAY62_RS02745 | Not Available | Positive | 609790 - 610686 | 33063.2 |
| malate synthase a | CAY62_RS02750 | Not Available | Positive | 611350 - 612948 | 60420.0 |
| isocitrate lyase | CAY62_RS02755 | Not Available | Positive | 613029 - 614336 | 47940.4 |
| cbs domain-containing protein | CAY62_RS02760 | Not Available | Negative | 614421 - 614897 | 17281.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Haemorrhagic septicemia | Causes | PMC12895208 |
| Skin lesions | Causes | PMC12895208 |
| Necrotizing fasciitis | Causes | PMC12895208 |
| Soft-tissue infection | Causes | PMC8231020 |
| Chronic suppurative pneumonia | Causes | PMC9796189 |
| Splenic lymphoid depletion | Causes | PMC9796189 |
| Wound infections | Causes | PMC9796189 |
| Hemorrhagic septicemia | Causes | PMC9796189 |
| Pneumonia | Causes | PMC9796189 |


