Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Vibrionales
Family
Vibrionaceae
Genus
Photobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Vibrionales |
| Family | Vibrionaceae |
| Genus | Photobacterium |
| Species | Photobacterium damselae |
| Strain | subsp. damselae strain KC-Na-1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | mesophilic |
| Habitat | coastal waters; estuaries; Marine; oceans; seaweeds; sediments |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Pancrustacea, Aves |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Photobacterium damselae subsp. damselae strain KC-Na-1 plasmid
Gene Summary
Adenine Count
24830 bp
Thymine Count
23536 bp
Guanine Count
16496 bp
Cytosine Count
16140 bp
Genome Length
81002 bp
Protein-coding Genes
81 genes
Non-Coding Genes
0 genes
# of Chromosomes/Plasmids
5
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| molecular chaperone dnak | CAY62_RS02410 | Not Available | Positive | 537086 - 539002 | 68865.6 |
| molecular chaperone dnaj | CAY62_RS02415 | Not Available | Positive | 539099 - 540223 | 40607.2 |
| hypothetical protein | CAY62_RS02420 | Not Available | Positive | 540842 - 542146 | 50032.6 |
| polysaccharide biosynthesis/export family protein | CAY62_RS02425 | Not Available | Positive | 542211 - 542687 | 17573.0 |
| gumc family protein | CAY62_RS02430 | Not Available | Positive | 542704 - 544803 | 78013.1 |
| lipopolysaccharide biosynthesis protein | CAY62_RS02435 | Not Available | Positive | 544800 - 546008 | 45814.9 |
| capsular biosynthesis protein | CAY62_RS02440 | Not Available | Positive | 546009 - 547409 | 51669.7 |
| serine o-acetyltransferase | CAY62_RS22175 | Not Available | Positive | 547387 - 547887 | 17652.2 |
| glycosyltransferase | CAY62_RS02450 | Not Available | Positive | 547891 - 549114 | 46273.0 |
| glycosyltransferase family 4 protein | CAY62_RS02455 | Not Available | Positive | 549129 - 550334 | 45013.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Haemorrhagic septicemia | Causes | PMC12895208 |
| Skin lesions | Causes | PMC12895208 |
| Necrotizing fasciitis | Causes | PMC12895208 |
| Soft-tissue infection | Causes | PMC8231020 |
| Chronic suppurative pneumonia | Causes | PMC9796189 |
| Splenic lymphoid depletion | Causes | PMC9796189 |
| Wound infections | Causes | PMC9796189 |
| Hemorrhagic septicemia | Causes | PMC9796189 |
| Pneumonia | Causes | PMC9796189 |


