Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Vibrionales
Family
Vibrionaceae
Genus
Photobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Vibrionales |
| Family | Vibrionaceae |
| Genus | Photobacterium |
| Species | Photobacterium damselae |
| Strain | subsp. damselae strain KC-Na-1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | mesophilic |
| Habitat | coastal waters; estuaries; Marine; oceans; seaweeds; sediments |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Pancrustacea, Aves |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Photobacterium damselae subsp. damselae strain KC-Na-1 plasmid
Gene Summary
Adenine Count
24830 bp
Thymine Count
23536 bp
Guanine Count
16496 bp
Cytosine Count
16140 bp
Genome Length
81002 bp
Protein-coding Genes
81 genes
Non-Coding Genes
0 genes
# of Chromosomes/Plasmids
5
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| tyrosine-type recombinase/integrase | CAY62_RS21865 | Not Available | Negative | 529282 - 529725 | 16802.3 |
| hypothetical protein | CAY62_RS02360 | Not Available | Negative | 529729 - 530562 | 32489.3 |
| Tmrna,resume consensus sequence (at 85): aatagtcgcaaacgacga | Not Available | Not Available | Positive | 530684 - 531053 | Not Available |
| ssra-binding protein smpb | CAY62_RS02370 | Not Available | Negative | 531176 - 531658 | 18048.9 |
| srpbcc family protein | CAY62_RS02375 | Not Available | Positive | 531852 - 532286 | 15870.2 |
| rnfh family protein | CAY62_RS02380 | Not Available | Positive | 532276 - 532572 | 11345.7 |
| outer membrane protein assembly factor bame | CAY62_RS02385 | Not Available | Negative | 532678 - 533034 | 13467.2 |
| dna repair protein recn | CAY62_RS02390 | Not Available | Negative | 533290 - 534957 | 62206.3 |
| nad(+) kinase | CAY62_RS02395 | Not Available | Negative | 535150 - 536031 | 32224.7 |
| nucleotide exchange factor grpe | CAY62_RS02405 | Not Available | Positive | 536251 - 536871 | 22902.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Haemorrhagic septicemia | Causes | PMC12895208 |
| Skin lesions | Causes | PMC12895208 |
| Necrotizing fasciitis | Causes | PMC12895208 |
| Soft-tissue infection | Causes | PMC8231020 |
| Chronic suppurative pneumonia | Causes | PMC9796189 |
| Splenic lymphoid depletion | Causes | PMC9796189 |
| Wound infections | Causes | PMC9796189 |
| Hemorrhagic septicemia | Causes | PMC9796189 |
| Pneumonia | Causes | PMC9796189 |


