Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Vibrionales
Family
Vibrionaceae
Genus
Photobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Vibrionales |
| Family | Vibrionaceae |
| Genus | Photobacterium |
| Species | Photobacterium damselae |
| Strain | subsp. damselae strain KC-Na-1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | mesophilic |
| Habitat | coastal waters; estuaries; Marine; oceans; seaweeds; sediments |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Pancrustacea, Aves |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Photobacterium damselae subsp. damselae strain KC-Na-1 plasmid
Gene Summary
Adenine Count
24830 bp
Thymine Count
23536 bp
Guanine Count
16496 bp
Cytosine Count
16140 bp
Genome Length
81002 bp
Protein-coding Genes
81 genes
Non-Coding Genes
0 genes
# of Chromosomes/Plasmids
5
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| histidine--trna ligase | CAY62_RS02270 | Not Available | Negative | 510623 - 511882 | 48198.9 |
| histidine decarboxylase | CAY62_RS02275 | Not Available | Negative | 511953 - 513089 | 42938.8 |
| histidine-histamine antiporter | CAY62_RS02280 | Not Available | Negative | 513144 - 514490 | 47250.8 |
| amino acid abc transporter atp-binding protein | CAY62_RS02285 | Not Available | Negative | 514977 - 517388 | 92239.8 |
| class i sam-dependent methyltransferase | CAY62_RS02290 | Not Available | Negative | 517390 - 517965 | 21407.1 |
| 3'-5' exonuclease | CAY62_RS02295 | Not Available | Positive | 518146 - 520014 | 71246.8 |
| amino acid abc transporter atp-binding protein | CAY62_RS21850 | Not Available | Negative | 520124 - 520321 | 7947.58 |
| amino acid abc transporter atp-binding protein | CAY62_RS02300 | Not Available | Negative | 520368 - 520884 | 17942.6 |
| hypothetical protein | CAY62_RS21740 | Not Available | Negative | 521335 - 521541 | 8172.74 |
| hypothetical protein | CAY62_RS02315 | Not Available | Negative | 521544 - 522317 | 30047.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Haemorrhagic septicemia | Causes | PMC12895208 |
| Skin lesions | Causes | PMC12895208 |
| Necrotizing fasciitis | Causes | PMC12895208 |
| Soft-tissue infection | Causes | PMC8231020 |
| Chronic suppurative pneumonia | Causes | PMC9796189 |
| Splenic lymphoid depletion | Causes | PMC9796189 |
| Wound infections | Causes | PMC9796189 |
| Hemorrhagic septicemia | Causes | PMC9796189 |
| Pneumonia | Causes | PMC9796189 |


