Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Vibrionales
Family
Vibrionaceae
Genus
Photobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Vibrionales |
| Family | Vibrionaceae |
| Genus | Photobacterium |
| Species | Photobacterium damselae |
| Strain | subsp. damselae strain KC-Na-1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | mesophilic |
| Habitat | coastal waters; estuaries; Marine; oceans; seaweeds; sediments |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Pancrustacea, Aves |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Photobacterium damselae subsp. damselae strain KC-Na-1 plasmid
Gene Summary
Adenine Count
24830 bp
Thymine Count
23536 bp
Guanine Count
16496 bp
Cytosine Count
16140 bp
Genome Length
81002 bp
Protein-coding Genes
81 genes
Non-Coding Genes
0 genes
# of Chromosomes/Plasmids
5
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| ytjb family periplasmic protein | CAY62_RS02220 | Not Available | Negative | 498600 - 499214 | 22905.1 |
| phosphoserine phosphatase | CAY62_RS02225 | Not Available | Positive | 499405 - 500406 | 36542.2 |
| dna repair protein rada | CAY62_RS02230 | Not Available | Positive | 500610 - 501998 | 49313.0 |
| m23 family metallopeptidase | CAY62_RS02235 | Not Available | Negative | 502112 - 503122 | 37341.3 |
| energy-dependent translational throttle protein etta | CAY62_RS02240 | Not Available | Negative | 503374 - 505041 | 62326.1 |
| murein transglycosylase | CAY62_RS02245 | Not Available | Positive | 505305 - 507233 | 72408.4 |
| trp operon repressor | CAY62_RS02250 | Not Available | Positive | 507372 - 507689 | 11862.1 |
| inosine/xanthosine triphosphatase | CAY62_RS02255 | Not Available | Negative | 507792 - 508307 | 18653.4 |
| helix-turn-helix domain-containing protein | CAY62_RS02260 | Not Available | Negative | 508523 - 509161 | 23395.6 |
| sporulation protein | CAY62_RS02265 | Not Available | Positive | 509786 - 510514 | 26989.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Haemorrhagic septicemia | Causes | PMC12895208 |
| Skin lesions | Causes | PMC12895208 |
| Necrotizing fasciitis | Causes | PMC12895208 |
| Soft-tissue infection | Causes | PMC8231020 |
| Chronic suppurative pneumonia | Causes | PMC9796189 |
| Splenic lymphoid depletion | Causes | PMC9796189 |
| Wound infections | Causes | PMC9796189 |
| Hemorrhagic septicemia | Causes | PMC9796189 |
| Pneumonia | Causes | PMC9796189 |


