Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Vibrionales
Family
Vibrionaceae
Genus
Photobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Vibrionales |
| Family | Vibrionaceae |
| Genus | Photobacterium |
| Species | Photobacterium damselae |
| Strain | subsp. damselae strain KC-Na-1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | mesophilic |
| Habitat | coastal waters; estuaries; Marine; oceans; seaweeds; sediments |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Pancrustacea, Aves |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Photobacterium damselae subsp. damselae strain KC-Na-1 plasmid
Gene Summary
Adenine Count
24830 bp
Thymine Count
23536 bp
Guanine Count
16496 bp
Cytosine Count
16140 bp
Genome Length
81002 bp
Protein-coding Genes
81 genes
Non-Coding Genes
0 genes
# of Chromosomes/Plasmids
5
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| ribosomal protein s18-alanine n-acetyltransferase | CAY62_RS02170 | Not Available | Positive | 486271 - 486717 | 17036.4 |
| peptide chain release factor 3 | CAY62_RS02175 | Not Available | Negative | 486825 - 488411 | 59251.6 |
| glycogen debranching protein glgx | CAY62_RS02180 | Not Available | Positive | 488738 - 490816 | 79434.3 |
| tatd family hydrolase | CAY62_RS02185 | Not Available | Positive | 490914 - 491708 | 29192.6 |
| nupc/nupg family nucleoside cnt transporter | CAY62_RS02190 | Not Available | Positive | 491929 - 493218 | 44337.2 |
| xapx domain-containing protein | CAY62_RS02195 | Not Available | Positive | 493458 - 493628 | 5963.61 |
| deoxyribose-phosphate aldolase | CAY62_RS02200 | Not Available | Positive | 494002 - 494778 | 27734.2 |
| thymidine phosphorylase | CAY62_RS02205 | Not Available | Positive | 495040 - 496371 | 47204.8 |
| phosphopentomutase | CAY62_RS02210 | Not Available | Positive | 496382 - 497602 | 44124.9 |
| purine-nucleoside phosphorylase | CAY62_RS02215 | Not Available | Positive | 497747 - 498472 | 26241.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Haemorrhagic septicemia | Causes | PMC12895208 |
| Skin lesions | Causes | PMC12895208 |
| Necrotizing fasciitis | Causes | PMC12895208 |
| Soft-tissue infection | Causes | PMC8231020 |
| Chronic suppurative pneumonia | Causes | PMC9796189 |
| Splenic lymphoid depletion | Causes | PMC9796189 |
| Wound infections | Causes | PMC9796189 |
| Hemorrhagic septicemia | Causes | PMC9796189 |
| Pneumonia | Causes | PMC9796189 |


