Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Vibrionales
Family
Vibrionaceae
Genus
Photobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Vibrionales |
| Family | Vibrionaceae |
| Genus | Photobacterium |
| Species | Photobacterium damselae |
| Strain | subsp. damselae strain KC-Na-1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | mesophilic |
| Habitat | coastal waters; estuaries; Marine; oceans; seaweeds; sediments |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Pancrustacea, Aves |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Photobacterium damselae subsp. damselae strain KC-Na-1 plasmid
Gene Summary
Adenine Count
24830 bp
Thymine Count
23536 bp
Guanine Count
16496 bp
Cytosine Count
16140 bp
Genome Length
81002 bp
Protein-coding Genes
81 genes
Non-Coding Genes
0 genes
# of Chromosomes/Plasmids
5
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| lipoprotein nlpi | CAY62_RS02120 | Not Available | Positive | 476396 - 477307 | 34370.6 |
| rna-guided endonuclease insq/tnpb family protein | CAY62_RS02125 | Not Available | Negative | 477385 - 478527 | 43339.2 |
| is200/is605 family transposase | CAY62_RS02130 | Not Available | Positive | 478585 - 479013 | 16170.7 |
| u32 family peptidase | CAY62_RS02135 | Not Available | Negative | 479183 - 480061 | 32953.2 |
| peptidase u32 family protein | CAY62_RS02140 | Not Available | Negative | 480075 - 481082 | 37325.1 |
| eal domain-containing protein | CAY62_RS02145 | Not Available | Negative | 481245 - 483269 | 76705.7 |
| scp2 domain-containing protein | CAY62_RS02150 | Not Available | Positive | 483460 - 483981 | 19903.9 |
| gnat family n-acetyltransferase | CAY62_RS02155 | Not Available | Positive | 483971 - 484477 | 18376.8 |
| glycerol dehydrogenase | CAY62_RS02160 | Not Available | Positive | 484663 - 485757 | 39124.1 |
| dna polymerase iii subunit psi | CAY62_RS02165 | Not Available | Positive | 485880 - 486281 | 15158.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Haemorrhagic septicemia | Causes | PMC12895208 |
| Skin lesions | Causes | PMC12895208 |
| Necrotizing fasciitis | Causes | PMC12895208 |
| Soft-tissue infection | Causes | PMC8231020 |
| Chronic suppurative pneumonia | Causes | PMC9796189 |
| Splenic lymphoid depletion | Causes | PMC9796189 |
| Wound infections | Causes | PMC9796189 |
| Hemorrhagic septicemia | Causes | PMC9796189 |
| Pneumonia | Causes | PMC9796189 |


