Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Vibrionales
Family
Vibrionaceae
Genus
Photobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Vibrionales |
| Family | Vibrionaceae |
| Genus | Photobacterium |
| Species | Photobacterium damselae |
| Strain | subsp. damselae strain KC-Na-1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | mesophilic |
| Habitat | coastal waters; estuaries; Marine; oceans; seaweeds; sediments |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Pancrustacea, Aves |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Photobacterium damselae subsp. damselae strain KC-Na-1 plasmid
Gene Summary
Adenine Count
24830 bp
Thymine Count
23536 bp
Guanine Count
16496 bp
Cytosine Count
16140 bp
Genome Length
81002 bp
Protein-coding Genes
81 genes
Non-Coding Genes
0 genes
# of Chromosomes/Plasmids
5
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| carbamoyl-phosphate synthase large subunit | CAY62_RS02020 | Not Available | Positive | 452106 - 455330 | 117698.0 |
| magnesium transporter | CAY62_RS02025 | Not Available | Positive | 455897 - 456748 | 30351.8 |
| serine-type d-ala-d-ala carboxypeptidase | CAY62_RS02030 | Not Available | Negative | 456851 - 458245 | 51475.2 |
| porin | CAY62_RS02035 | Not Available | Negative | 458355 - 459404 | 38073.0 |
| transcription elongation factor grea | CAY62_RS02040 | Not Available | Positive | 460045 - 460518 | 17597.1 |
| ribosome assembly rna-binding protein yhby | CAY62_RS02045 | Not Available | Negative | 460651 - 460947 | 11097.8 |
| 23s rrna (uridine(2552)-2'-o)-methyltransferase rlme | CAY62_RS02050 | Not Available | Positive | 461161 - 461790 | 23237.1 |
| atp-dependent zinc metalloprotease ftsh | CAY62_RS02055 | Not Available | Positive | 461831 - 463786 | 72037.5 |
| dihydropteroate synthase | CAY62_RS02060 | Not Available | Positive | 463855 - 464691 | 30522.0 |
| phosphoglucosamine mutase | CAY62_RS02065 | Not Available | Positive | 464740 - 466077 | 47612.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Haemorrhagic septicemia | Causes | PMC12895208 |
| Skin lesions | Causes | PMC12895208 |
| Necrotizing fasciitis | Causes | PMC12895208 |
| Soft-tissue infection | Causes | PMC8231020 |
| Chronic suppurative pneumonia | Causes | PMC9796189 |
| Splenic lymphoid depletion | Causes | PMC9796189 |
| Wound infections | Causes | PMC9796189 |
| Hemorrhagic septicemia | Causes | PMC9796189 |
| Pneumonia | Causes | PMC9796189 |


