Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Vibrionales
Family
Vibrionaceae
Genus
Photobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Vibrionales |
| Family | Vibrionaceae |
| Genus | Photobacterium |
| Species | Photobacterium damselae |
| Strain | subsp. damselae strain KC-Na-1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | mesophilic |
| Habitat | coastal waters; estuaries; Marine; oceans; seaweeds; sediments |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Pancrustacea, Aves |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Photobacterium damselae subsp. damselae strain KC-Na-1 plasmid
Gene Summary
Adenine Count
24830 bp
Thymine Count
23536 bp
Guanine Count
16496 bp
Cytosine Count
16140 bp
Genome Length
81002 bp
Protein-coding Genes
81 genes
Non-Coding Genes
0 genes
# of Chromosomes/Plasmids
5
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| arsr/smtb family transcription factor | CAY62_RS01970 | Not Available | Positive | 441206 - 441508 | 11416.0 |
| 30s ribosomal protein s20 | CAY62_RS01975 | Not Available | Negative | 441599 - 441859 | 9677.15 |
| murein biosynthesis integral membrane protein murj | CAY62_RS01980 | Not Available | Positive | 442070 - 443629 | 56700.3 |
| bifunctional riboflavin kinase/fad synthetase | CAY62_RS01985 | Not Available | Positive | 443711 - 444673 | 35908.6 |
| isoleucine--trna ligase | CAY62_RS01990 | Not Available | Positive | 444679 - 447519 | 105796.0 |
| signal peptidase ii | CAY62_RS01995 | Not Available | Positive | 447519 - 448019 | 18667.9 |
| fkbp-type peptidyl-prolyl cis-trans isomerase | CAY62_RS02000 | Not Available | Positive | 448128 - 448562 | 15566.5 |
| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase | CAY62_RS02005 | Not Available | Positive | 448576 - 449523 | 34868.5 |
| 4-hydroxy-tetrahydrodipicolinate reductase | CAY62_RS02010 | Not Available | Positive | 449599 - 450405 | 28516.5 |
| glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit | CAY62_RS02015 | Not Available | Positive | 450950 - 452089 | 40877.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Haemorrhagic septicemia | Causes | PMC12895208 |
| Skin lesions | Causes | PMC12895208 |
| Necrotizing fasciitis | Causes | PMC12895208 |
| Soft-tissue infection | Causes | PMC8231020 |
| Chronic suppurative pneumonia | Causes | PMC9796189 |
| Splenic lymphoid depletion | Causes | PMC9796189 |
| Wound infections | Causes | PMC9796189 |
| Hemorrhagic septicemia | Causes | PMC9796189 |
| Pneumonia | Causes | PMC9796189 |


