Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Vibrionales
Family
Vibrionaceae
Genus
Photobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Vibrionales |
| Family | Vibrionaceae |
| Genus | Photobacterium |
| Species | Photobacterium damselae |
| Strain | subsp. damselae strain KC-Na-1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | mesophilic |
| Habitat | coastal waters; estuaries; Marine; oceans; seaweeds; sediments |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Pancrustacea, Aves |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Photobacterium damselae subsp. damselae strain KC-Na-1 plasmid
Gene Summary
Adenine Count
24830 bp
Thymine Count
23536 bp
Guanine Count
16496 bp
Cytosine Count
16140 bp
Genome Length
81002 bp
Protein-coding Genes
81 genes
Non-Coding Genes
0 genes
# of Chromosomes/Plasmids
5
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| dna mismatch repair endonuclease muth | CAY62_RS01920 | Not Available | Negative | 430059 - 430727 | 24604.7 |
| rna pyrophosphohydrolase | CAY62_RS01925 | Not Available | Positive | 431353 - 431874 | 20841.0 |
| phosphoenolpyruvate--protein phosphotransferase | CAY62_RS01930 | Not Available | Positive | 431915 - 434173 | 84144.7 |
| sulfite exporter taue/safe family protein | CAY62_RS01935 | Not Available | Positive | 434193 - 434999 | 27521.8 |
| prolipoprotein diacylglyceryl transferase | CAY62_RS01940 | Not Available | Positive | 435044 - 435847 | 29898.0 |
| thymidylate synthase | CAY62_RS01945 | Not Available | Positive | 436046 - 436897 | 32603.8 |
| na/pi symporter | CAY62_RS01950 | Not Available | Negative | 437065 - 438210 | 40190.4 |
| na+/h+ antiporter nhaa | CAY62_RS01955 | Not Available | Positive | 438698 - 439870 | 40774.8 |
| hypothetical protein | CAY62_RS01960 | Not Available | Positive | 439875 - 440120 | 9049.82 |
| transcriptional activator nhar | CAY62_RS01965 | Not Available | Positive | 440221 - 441108 | 34136.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Haemorrhagic septicemia | Causes | PMC12895208 |
| Skin lesions | Causes | PMC12895208 |
| Necrotizing fasciitis | Causes | PMC12895208 |
| Soft-tissue infection | Causes | PMC8231020 |
| Chronic suppurative pneumonia | Causes | PMC9796189 |
| Splenic lymphoid depletion | Causes | PMC9796189 |
| Wound infections | Causes | PMC9796189 |
| Hemorrhagic septicemia | Causes | PMC9796189 |
| Pneumonia | Causes | PMC9796189 |


