Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Vibrionales
Family
Vibrionaceae
Genus
Photobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Vibrionales |
| Family | Vibrionaceae |
| Genus | Photobacterium |
| Species | Photobacterium damselae |
| Strain | subsp. damselae strain KC-Na-1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | mesophilic |
| Habitat | coastal waters; estuaries; Marine; oceans; seaweeds; sediments |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Pancrustacea, Aves |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Photobacterium damselae subsp. damselae strain KC-Na-1 plasmid
Gene Summary
Adenine Count
24830 bp
Thymine Count
23536 bp
Guanine Count
16496 bp
Cytosine Count
16140 bp
Genome Length
81002 bp
Protein-coding Genes
81 genes
Non-Coding Genes
0 genes
# of Chromosomes/Plasmids
5
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| atp-dependent rna helicase srmb | CAY62_RS01870 | Not Available | Negative | 417564 - 418856 | 48584.5 |
| trna1(val) (adenine(37)-n6)-methyltransferase | CAY62_RS01875 | Not Available | Negative | 418985 - 419698 | 25752.9 |
| branched-chain amino acid transport system ii carrier protein | CAY62_RS01880 | Not Available | Positive | 420120 - 421388 | 44595.6 |
| flavodoxin fldb | CAY62_RS01885 | Not Available | Negative | 421463 - 421987 | 19689.1 |
| site-specific tyrosine recombinase xerd | CAY62_RS01890 | Not Available | Positive | 422203 - 423057 | 32828.8 |
| bifunctional protein-disulfide isomerase/oxidoreductase dsbc | CAY62_RS01895 | Not Available | Positive | 423231 - 423962 | 26401.8 |
| single-stranded-dna-specific exonuclease recj | CAY62_RS01900 | Not Available | Positive | 424067 - 425791 | 62779.8 |
| peptide chain release factor 2 | CAY62_RS01905 | Not Available | Positive | 425950 - 427048 | 41026.7 |
| lysine--trna ligase | CAY62_RS01910 | Not Available | Positive | 427081 - 428583 | 57040.2 |
| sigma-54 dependent transcriptional regulator | CAY62_RS01915 | Not Available | Positive | 428692 - 430008 | 49664.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Haemorrhagic septicemia | Causes | PMC12895208 |
| Skin lesions | Causes | PMC12895208 |
| Necrotizing fasciitis | Causes | PMC12895208 |
| Soft-tissue infection | Causes | PMC8231020 |
| Chronic suppurative pneumonia | Causes | PMC9796189 |
| Splenic lymphoid depletion | Causes | PMC9796189 |
| Wound infections | Causes | PMC9796189 |
| Hemorrhagic septicemia | Causes | PMC9796189 |
| Pneumonia | Causes | PMC9796189 |


