Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Vibrionales
Family
Vibrionaceae
Genus
Photobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Vibrionales |
| Family | Vibrionaceae |
| Genus | Photobacterium |
| Species | Photobacterium damselae |
| Strain | subsp. damselae strain KC-Na-1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | mesophilic |
| Habitat | coastal waters; estuaries; Marine; oceans; seaweeds; sediments |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Pancrustacea, Aves |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Photobacterium damselae subsp. damselae strain KC-Na-1 plasmid
Gene Summary
Adenine Count
24830 bp
Thymine Count
23536 bp
Guanine Count
16496 bp
Cytosine Count
16140 bp
Genome Length
81002 bp
Protein-coding Genes
81 genes
Non-Coding Genes
0 genes
# of Chromosomes/Plasmids
5
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| homoserine kinase | CAY62_RS01820 | Not Available | Positive | 406823 - 407779 | 34451.4 |
| threonine synthase | CAY62_RS01825 | Not Available | Positive | 407780 - 409078 | 47104.4 |
| autonomous glycyl radical cofactor grca | CAY62_RS01830 | Not Available | Negative | 409247 - 409624 | 13754.2 |
| deoxyribonuclease iv | CAY62_RS01835 | Not Available | Positive | 409990 - 410832 | 31327.3 |
| uracil-dna glycosylase | CAY62_RS01840 | Not Available | Positive | 410887 - 411546 | 24688.2 |
| hemerythrin domain-containing protein | CAY62_RS01845 | Not Available | Positive | 411656 - 412186 | 21298.4 |
| duf3545 family protein | CAY62_RS01850 | Not Available | Negative | 412251 - 412433 | 7512.76 |
| alanine/glycine:cation symporter family protein | CAY62_RS01855 | Not Available | Positive | 413202 - 414629 | 51278.2 |
| peroxide stress protein yaaa | CAY62_RS01860 | Not Available | Positive | 414801 - 415574 | 29087.2 |
| group ii intron reverse transcriptase/maturase | CAY62_RS01865 | Not Available | Positive | 416208 - 417500 | 49752.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Haemorrhagic septicemia | Causes | PMC12895208 |
| Skin lesions | Causes | PMC12895208 |
| Necrotizing fasciitis | Causes | PMC12895208 |
| Soft-tissue infection | Causes | PMC8231020 |
| Chronic suppurative pneumonia | Causes | PMC9796189 |
| Splenic lymphoid depletion | Causes | PMC9796189 |
| Wound infections | Causes | PMC9796189 |
| Hemorrhagic septicemia | Causes | PMC9796189 |
| Pneumonia | Causes | PMC9796189 |


