Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Vibrionales
Family
Vibrionaceae
Genus
Photobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Vibrionales |
| Family | Vibrionaceae |
| Genus | Photobacterium |
| Species | Photobacterium damselae |
| Strain | subsp. damselae strain KC-Na-1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | mesophilic |
| Habitat | coastal waters; estuaries; Marine; oceans; seaweeds; sediments |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Pancrustacea, Aves |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Photobacterium damselae subsp. damselae strain KC-Na-1 plasmid
Gene Summary
Adenine Count
24830 bp
Thymine Count
23536 bp
Guanine Count
16496 bp
Cytosine Count
16140 bp
Genome Length
81002 bp
Protein-coding Genes
81 genes
Non-Coding Genes
0 genes
# of Chromosomes/Plasmids
5
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| glutamate synthase subunit beta | CAY62_RS01770 | Not Available | Negative | 387603 - 389069 | 53190.3 |
| glutamate synthase large subunit | CAY62_RS01775 | Not Available | Negative | 389062 - 393609 | 168084.0 |
| tigr01212 family radical sam protein | CAY62_RS01780 | Not Available | Positive | 394253 - 395182 | 34640.6 |
| diguanylate cyclase domain-containing protein | CAY62_RS01785 | Not Available | Positive | 395374 - 397185 | 68632.9 |
| aerobic respiration two-component sensor histidine kinase arcb | CAY62_RS01790 | Not Available | Positive | 397326 - 399692 | 89181.1 |
| two-component system response regulator arca | CAY62_RS01795 | Not Available | Negative | 399771 - 400490 | 27412.9 |
| putative 4-hydroxy-4-methyl-2-oxoglutarate aldolase | CAY62_RS01800 | Not Available | Positive | 401154 - 401651 | 18099.9 |
| hypothetical protein | CAY62_RS01805 | Not Available | Negative | 401659 - 402138 | 17721.9 |
| bifunctional isocitrate dehydrogenase kinase/phosphatase | CAY62_RS01810 | Not Available | Negative | 402268 - 403992 | 67068.3 |
| bifunctional aspartate kinase/homoserine dehydrogenase i | CAY62_RS01815 | Not Available | Positive | 404362 - 406821 | 88475.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Haemorrhagic septicemia | Causes | PMC12895208 |
| Skin lesions | Causes | PMC12895208 |
| Necrotizing fasciitis | Causes | PMC12895208 |
| Soft-tissue infection | Causes | PMC8231020 |
| Chronic suppurative pneumonia | Causes | PMC9796189 |
| Splenic lymphoid depletion | Causes | PMC9796189 |
| Wound infections | Causes | PMC9796189 |
| Hemorrhagic septicemia | Causes | PMC9796189 |
| Pneumonia | Causes | PMC9796189 |


