Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Vibrionales
Family
Vibrionaceae
Genus
Photobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Vibrionales |
| Family | Vibrionaceae |
| Genus | Photobacterium |
| Species | Photobacterium damselae |
| Strain | subsp. damselae strain KC-Na-1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | mesophilic |
| Habitat | coastal waters; estuaries; Marine; oceans; seaweeds; sediments |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Pancrustacea, Aves |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Photobacterium damselae subsp. damselae strain KC-Na-1 plasmid
Gene Summary
Adenine Count
24830 bp
Thymine Count
23536 bp
Guanine Count
16496 bp
Cytosine Count
16140 bp
Genome Length
81002 bp
Protein-coding Genes
81 genes
Non-Coding Genes
0 genes
# of Chromosomes/Plasmids
5
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| iron-sulfur cluster insertion protein erpa | CAY62_RS01720 | Not Available | Positive | 374019 - 374360 | 12022.1 |
| peptidoglycan dd-metalloendopeptidase family protein | CAY62_RS01725 | Not Available | Negative | 374468 - 375769 | 48569.1 |
| tyrosine--trna ligase | CAY62_RS01730 | Not Available | Positive | 375897 - 377084 | 44348.7 |
| deda family protein | CAY62_RS01735 | Not Available | Positive | 377185 - 377790 | 22383.4 |
| tric cation channel family protein | CAY62_RS01740 | Not Available | Negative | 378139 - 378753 | 21720.4 |
| vitamin b12 abc transporter substrate-binding protein btuf | CAY62_RS01745 | Not Available | Negative | 378870 - 379703 | 31207.3 |
| cobalamin biosynthesis family protein | CAY62_RS01750 | Not Available | Negative | 379704 - 380663 | 35632.1 |
| 5'-methylthioadenosine/s-adenosylhomocysteine nucleosidase | CAY62_RS01755 | Not Available | Negative | 380663 - 381361 | 24795.8 |
| fad-dependent oxidoreductase | CAY62_RS01760 | Not Available | Negative | 381488 - 382906 | 52153.3 |
| glutamate synthase large subunit | CAY62_RS01765 | Not Available | Negative | 382918 - 387378 | 163332.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Haemorrhagic septicemia | Causes | PMC12895208 |
| Skin lesions | Causes | PMC12895208 |
| Necrotizing fasciitis | Causes | PMC12895208 |
| Soft-tissue infection | Causes | PMC8231020 |
| Chronic suppurative pneumonia | Causes | PMC9796189 |
| Splenic lymphoid depletion | Causes | PMC9796189 |
| Wound infections | Causes | PMC9796189 |
| Hemorrhagic septicemia | Causes | PMC9796189 |
| Pneumonia | Causes | PMC9796189 |


