Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Vibrionales
Family
Vibrionaceae
Genus
Photobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Vibrionales |
| Family | Vibrionaceae |
| Genus | Photobacterium |
| Species | Photobacterium damselae |
| Strain | subsp. damselae strain KC-Na-1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | mesophilic |
| Habitat | coastal waters; estuaries; Marine; oceans; seaweeds; sediments |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Pancrustacea, Aves |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Photobacterium damselae subsp. damselae strain KC-Na-1 plasmid
Gene Summary
Adenine Count
24830 bp
Thymine Count
23536 bp
Guanine Count
16496 bp
Cytosine Count
16140 bp
Genome Length
81002 bp
Protein-coding Genes
81 genes
Non-Coding Genes
0 genes
# of Chromosomes/Plasmids
5
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| abc transporter atp-binding protein | CAY62_RS01670 | Not Available | Negative | 357996 - 358997 | 37339.3 |
| abc transporter atp-binding protein | CAY62_RS01675 | Not Available | Negative | 359023 - 359994 | 36076.0 |
| abc transporter permease | CAY62_RS01680 | Not Available | Negative | 359994 - 361019 | 36848.6 |
| abc transporter permease | CAY62_RS01685 | Not Available | Negative | 361022 - 362008 | 36505.5 |
| abc transporter substrate-binding protein | CAY62_RS01690 | Not Available | Negative | 362155 - 363831 | 63186.8 |
| response regulator | CAY62_RS01695 | Not Available | Negative | 364519 - 367911 | 127151.0 |
| 16s rrna (guanine(1207)-n(2))-methyltransferase rsmc | CAY62_RS01700 | Not Available | Negative | 368225 - 369244 | 37563.8 |
| ai-2e family transporter | CAY62_RS01705 | Not Available | Negative | 369444 - 370532 | 40114.1 |
| glutamate-1-semialdehyde 2,1-aminomutase | CAY62_RS01710 | Not Available | Negative | 370905 - 372197 | 45847.1 |
| h(+)/cl(-) exchange transporter clca | CAY62_RS01715 | Not Available | Positive | 372557 - 373957 | 50106.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Haemorrhagic septicemia | Causes | PMC12895208 |
| Skin lesions | Causes | PMC12895208 |
| Necrotizing fasciitis | Causes | PMC12895208 |
| Soft-tissue infection | Causes | PMC8231020 |
| Chronic suppurative pneumonia | Causes | PMC9796189 |
| Splenic lymphoid depletion | Causes | PMC9796189 |
| Wound infections | Causes | PMC9796189 |
| Hemorrhagic septicemia | Causes | PMC9796189 |
| Pneumonia | Causes | PMC9796189 |


