Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Vibrionales
Family
Vibrionaceae
Genus
Photobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Vibrionales |
| Family | Vibrionaceae |
| Genus | Photobacterium |
| Species | Photobacterium damselae |
| Strain | subsp. damselae strain KC-Na-1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | mesophilic |
| Habitat | coastal waters; estuaries; Marine; oceans; seaweeds; sediments |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Pancrustacea, Aves |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Photobacterium damselae subsp. damselae strain KC-Na-1 plasmid
Gene Summary
Adenine Count
24830 bp
Thymine Count
23536 bp
Guanine Count
16496 bp
Cytosine Count
16140 bp
Genome Length
81002 bp
Protein-coding Genes
81 genes
Non-Coding Genes
0 genes
# of Chromosomes/Plasmids
5
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| arginine deiminase | CAY62_RS01520 | Not Available | Negative | 316395 - 317615 | 45162.0 |
| yfcc family protein | CAY62_RS01525 | Not Available | Negative | 318389 - 319846 | 52029.8 |
| ribonuclease e inhibitor rrab | CAY62_RS01530 | Not Available | Positive | 320568 - 320969 | 15136.1 |
| beta-mannosidase | CAY62_RS01535 | Not Available | Positive | 321271 - 323697 | 93447.7 |
| duf2061 domain-containing protein | CAY62_RS01540 | Not Available | Negative | 323911 - 324312 | 14880.4 |
| valine--trna ligase | CAY62_RS01545 | Not Available | Negative | 324515 - 327376 | 107929.0 |
| dna polymerase iii subunit chi | CAY62_RS01550 | Not Available | Negative | 327405 - 327857 | 17143.3 |
| leucyl aminopeptidase | CAY62_RS01555 | Not Available | Negative | 327962 - 329470 | 54454.7 |
| lps export abc transporter permease lptf | CAY62_RS01560 | Not Available | Positive | 329665 - 330765 | 40712.4 |
| lps export abc transporter permease lptg | CAY62_RS01565 | Not Available | Positive | 330765 - 331835 | 39582.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Haemorrhagic septicemia | Causes | PMC12895208 |
| Skin lesions | Causes | PMC12895208 |
| Necrotizing fasciitis | Causes | PMC12895208 |
| Soft-tissue infection | Causes | PMC8231020 |
| Chronic suppurative pneumonia | Causes | PMC9796189 |
| Splenic lymphoid depletion | Causes | PMC9796189 |
| Wound infections | Causes | PMC9796189 |
| Hemorrhagic septicemia | Causes | PMC9796189 |
| Pneumonia | Causes | PMC9796189 |


