Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Vibrionales
Family
Vibrionaceae
Genus
Photobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Vibrionales |
| Family | Vibrionaceae |
| Genus | Photobacterium |
| Species | Photobacterium damselae |
| Strain | subsp. damselae strain KC-Na-1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | mesophilic |
| Habitat | coastal waters; estuaries; Marine; oceans; seaweeds; sediments |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Pancrustacea, Aves |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Photobacterium damselae subsp. damselae strain KC-Na-1 plasmid
Gene Summary
Adenine Count
24830 bp
Thymine Count
23536 bp
Guanine Count
16496 bp
Cytosine Count
16140 bp
Genome Length
81002 bp
Protein-coding Genes
81 genes
Non-Coding Genes
0 genes
# of Chromosomes/Plasmids
5
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| dna topoisomerase iv subunit b | CAY62_RS01470 | Not Available | Positive | 305189 - 307072 | 69622.4 |
| dna topoisomerase iv subunit a | CAY62_RS01475 | Not Available | Positive | 307141 - 309405 | 84526.0 |
| 1-acylglycerol-3-phosphate o-acyltransferase | CAY62_RS01480 | Not Available | Positive | 309555 - 310277 | 26708.9 |
| isopentenyl-diphosphate delta-isomerase | CAY62_RS01485 | Not Available | Positive | 310376 - 310906 | 20433.1 |
| rida family protein | CAY62_RS01490 | Not Available | Negative | 310980 - 311366 | 13748.4 |
| arginine repressor | CAY62_RS01495 | Not Available | Negative | 311497 - 311988 | 18093.8 |
| aspartate carbamoyltransferase regulatory subunit | CAY62_RS01500 | Not Available | Negative | 312355 - 312819 | 17205.0 |
| aspartate carbamoyltransferase | CAY62_RS01505 | Not Available | Negative | 312839 - 313768 | 34662.3 |
| ornithine carbamoyltransferase | CAY62_RS01510 | Not Available | Negative | 314274 - 315284 | 37600.1 |
| carbamate kinase | CAY62_RS01515 | Not Available | Negative | 315409 - 316320 | 32555.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Haemorrhagic septicemia | Causes | PMC12895208 |
| Skin lesions | Causes | PMC12895208 |
| Necrotizing fasciitis | Causes | PMC12895208 |
| Soft-tissue infection | Causes | PMC8231020 |
| Chronic suppurative pneumonia | Causes | PMC9796189 |
| Splenic lymphoid depletion | Causes | PMC9796189 |
| Wound infections | Causes | PMC9796189 |
| Hemorrhagic septicemia | Causes | PMC9796189 |
| Pneumonia | Causes | PMC9796189 |


