Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Vibrionales
Family
Vibrionaceae
Genus
Photobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Vibrionales |
| Family | Vibrionaceae |
| Genus | Photobacterium |
| Species | Photobacterium damselae |
| Strain | subsp. damselae strain KC-Na-1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | mesophilic |
| Habitat | coastal waters; estuaries; Marine; oceans; seaweeds; sediments |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Pancrustacea, Aves |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Photobacterium damselae subsp. damselae strain KC-Na-1 plasmid
Gene Summary
Adenine Count
24830 bp
Thymine Count
23536 bp
Guanine Count
16496 bp
Cytosine Count
16140 bp
Genome Length
81002 bp
Protein-coding Genes
81 genes
Non-Coding Genes
0 genes
# of Chromosomes/Plasmids
5
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| trna (adenosine(37)-n6)-threonylcarbamoyltransferase complex transferase subunit tsad | CAY62_RS01370 | Not Available | Positive | 283641 - 284660 | 36593.4 |
| glycerol-3-phosphate 1-o-acyltransferase plsy | CAY62_RS01375 | Not Available | Negative | 284737 - 285354 | 22337.1 |
| dihydroneopterin aldolase | CAY62_RS01380 | Not Available | Positive | 285627 - 285986 | 13316.2 |
| 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase | CAY62_RS01385 | Not Available | Positive | 285983 - 286477 | 18916.7 |
| undecaprenyl-diphosphate phosphatase | CAY62_RS01390 | Not Available | Positive | 286487 - 287290 | 29208.6 |
| multifunctional cca addition/repair protein | CAY62_RS01395 | Not Available | Negative | 287336 - 288568 | 45893.5 |
| aaa family atpase | CAY62_RS01400 | Not Available | Positive | 288785 - 290428 | 61202.4 |
| general secretion pathway protein gspb | CAY62_RS01405 | Not Available | Positive | 290431 - 291333 | 32732.6 |
| tigr04211 family sh3 domain-containing protein | CAY62_RS01410 | Not Available | Negative | 291440 - 292057 | 23015.7 |
| inorganic phosphate transporter | CAY62_RS01415 | Not Available | Negative | 292205 - 293473 | 43993.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Haemorrhagic septicemia | Causes | PMC12895208 |
| Skin lesions | Causes | PMC12895208 |
| Necrotizing fasciitis | Causes | PMC12895208 |
| Soft-tissue infection | Causes | PMC8231020 |
| Chronic suppurative pneumonia | Causes | PMC9796189 |
| Splenic lymphoid depletion | Causes | PMC9796189 |
| Wound infections | Causes | PMC9796189 |
| Hemorrhagic septicemia | Causes | PMC9796189 |
| Pneumonia | Causes | PMC9796189 |


