Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Vibrionales
Family
Vibrionaceae
Genus
Photobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Vibrionales |
| Family | Vibrionaceae |
| Genus | Photobacterium |
| Species | Photobacterium damselae |
| Strain | subsp. damselae strain KC-Na-1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | mesophilic |
| Habitat | coastal waters; estuaries; Marine; oceans; seaweeds; sediments |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Pancrustacea, Aves |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Photobacterium damselae subsp. damselae strain KC-Na-1 plasmid
Gene Summary
Adenine Count
24830 bp
Thymine Count
23536 bp
Guanine Count
16496 bp
Cytosine Count
16140 bp
Genome Length
81002 bp
Protein-coding Genes
81 genes
Non-Coding Genes
0 genes
# of Chromosomes/Plasmids
5
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| acetolactate synthase 3 large subunit | CAY62_RS01325 | Not Available | Positive | 273105 - 274829 | 63003.9 |
| acetolactate synthase small subunit | CAY62_RS01330 | Not Available | Positive | 274822 - 275319 | 18087.8 |
| hypothetical protein | CAY62_RS22165 | Not Available | Positive | 275438 - 275566 | 4806.17 |
| gntr family transcriptional regulator | CAY62_RS01335 | Not Available | Negative | 275656 - 276309 | 25129.1 |
| pyruvate kinase pykf | CAY62_RS01340 | Not Available | Negative | 276654 - 278066 | 50474.0 |
| Trna-met | Not Available | Not Available | Positive | 278594 - 278669 | Not Available |
| rna polymerase sigma factor rpod | CAY62_RS01350 | Not Available | Negative | 278845 - 280704 | 70832.8 |
| dna primase | CAY62_RS01355 | Not Available | Negative | 280797 - 282551 | 66296.3 |
| gatb/yqey domain-containing protein | CAY62_RS01360 | Not Available | Negative | 282699 - 283142 | 15961.6 |
| 30s ribosomal protein s21 | CAY62_RS01365 | Not Available | Negative | 283173 - 283388 | 8498.56 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Haemorrhagic septicemia | Causes | PMC12895208 |
| Skin lesions | Causes | PMC12895208 |
| Necrotizing fasciitis | Causes | PMC12895208 |
| Soft-tissue infection | Causes | PMC8231020 |
| Chronic suppurative pneumonia | Causes | PMC9796189 |
| Splenic lymphoid depletion | Causes | PMC9796189 |
| Wound infections | Causes | PMC9796189 |
| Hemorrhagic septicemia | Causes | PMC9796189 |
| Pneumonia | Causes | PMC9796189 |


