Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Vibrionales
Family
Vibrionaceae
Genus
Photobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Vibrionales |
| Family | Vibrionaceae |
| Genus | Photobacterium |
| Species | Photobacterium damselae |
| Strain | subsp. damselae strain KC-Na-1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | mesophilic |
| Habitat | coastal waters; estuaries; Marine; oceans; seaweeds; sediments |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Pancrustacea, Aves |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Photobacterium damselae subsp. damselae strain KC-Na-1 plasmid
Gene Summary
Adenine Count
24830 bp
Thymine Count
23536 bp
Guanine Count
16496 bp
Cytosine Count
16140 bp
Genome Length
81002 bp
Protein-coding Genes
81 genes
Non-Coding Genes
0 genes
# of Chromosomes/Plasmids
5
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| thiamine abc transporter atp-binding protein | CAY62_RS01275 | Not Available | Negative | 259522 - 260226 | 25787.4 |
| thiamine/thiamine pyrophosphate abc transporter permease | CAY62_RS01280 | Not Available | Negative | 260219 - 261814 | 58369.7 |
| thiamine abc transporter substrate binding subunit | CAY62_RS01285 | Not Available | Negative | 261887 - 262825 | 35243.9 |
| duf547 domain-containing protein | CAY62_RS01290 | Not Available | Negative | 263128 - 263928 | 30895.7 |
| 3-isopropylmalate dehydratase small subunit | CAY62_RS01295 | Not Available | Negative | 263990 - 264592 | 22602.5 |
| 3-isopropylmalate dehydratase large subunit | CAY62_RS01300 | Not Available | Negative | 264592 - 266016 | 50609.7 |
| 3-isopropylmalate dehydrogenase | CAY62_RS01305 | Not Available | Negative | 266050 - 267141 | 39542.3 |
| 2-isopropylmalate synthase | CAY62_RS01310 | Not Available | Negative | 267169 - 268710 | 56189.7 |
| transcriptional regulator leuo | CAY62_RS01315 | Not Available | Positive | 269556 - 270512 | 35461.6 |
| amp-dependent synthetase/ligase | CAY62_RS01320 | Not Available | Positive | 270908 - 272725 | 68794.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Haemorrhagic septicemia | Causes | PMC12895208 |
| Skin lesions | Causes | PMC12895208 |
| Necrotizing fasciitis | Causes | PMC12895208 |
| Soft-tissue infection | Causes | PMC8231020 |
| Chronic suppurative pneumonia | Causes | PMC9796189 |
| Splenic lymphoid depletion | Causes | PMC9796189 |
| Wound infections | Causes | PMC9796189 |
| Hemorrhagic septicemia | Causes | PMC9796189 |
| Pneumonia | Causes | PMC9796189 |


