Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Vibrionales
Family
Vibrionaceae
Genus
Photobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Vibrionales |
| Family | Vibrionaceae |
| Genus | Photobacterium |
| Species | Photobacterium damselae |
| Strain | subsp. damselae strain KC-Na-1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | mesophilic |
| Habitat | coastal waters; estuaries; Marine; oceans; seaweeds; sediments |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Pancrustacea, Aves |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Photobacterium damselae subsp. damselae strain KC-Na-1 plasmid
Gene Summary
Adenine Count
24830 bp
Thymine Count
23536 bp
Guanine Count
16496 bp
Cytosine Count
16140 bp
Genome Length
81002 bp
Protein-coding Genes
81 genes
Non-Coding Genes
0 genes
# of Chromosomes/Plasmids
5
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| duf1107 domain-containing protein | CAY62_RS01125 | Not Available | Positive | 223823 - 224038 | 8285.21 |
| autotransporter assembly complex protein tama | CAY62_RS01130 | Not Available | Positive | 224289 - 226010 | 63838.0 |
| translocation/assembly module tamb domain-containing protein | CAY62_RS01135 | Not Available | Positive | 226007 - 229759 | 134150.0 |
| rhodanese-like domain-containing protein | CAY62_RS01140 | Not Available | Negative | 229850 - 230230 | 14241.1 |
| inorganic diphosphatase | CAY62_RS01145 | Not Available | Negative | 230230 - 230760 | 19618.4 |
| class 1 fructose-bisphosphatase | CAY62_RS01150 | Not Available | Negative | 230907 - 231917 | 37360.4 |
| udp-n-acetylmuramate:l-alanyl-gamma-d-glutamyl- meso-diaminopimelate ligase | CAY62_RS01155 | Not Available | Positive | 232155 - 233510 | 49213.8 |
| flavin prenyltransferase ubix | CAY62_RS01160 | Not Available | Positive | 233532 - 234152 | 22586.5 |
| trap transporter permease | CAY62_RS01165 | Not Available | Negative | 234246 - 236816 | 93104.5 |
| taxi family trap transporter solute-binding subunit | CAY62_RS01170 | Not Available | Negative | 236926 - 237897 | 34830.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Haemorrhagic septicemia | Causes | PMC12895208 |
| Skin lesions | Causes | PMC12895208 |
| Necrotizing fasciitis | Causes | PMC12895208 |
| Soft-tissue infection | Causes | PMC8231020 |
| Chronic suppurative pneumonia | Causes | PMC9796189 |
| Splenic lymphoid depletion | Causes | PMC9796189 |
| Wound infections | Causes | PMC9796189 |
| Hemorrhagic septicemia | Causes | PMC9796189 |
| Pneumonia | Causes | PMC9796189 |


